Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   J5V73_RS08000 Genome accession   NZ_CP072057
Coordinates   1551782..1552384 (-) Length   200 a.a.
NCBI ID   WP_105583987.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1546782..1557384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V73_RS07980 (J5V73_07980) dnaD 1547055..1547762 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  J5V73_RS07985 (J5V73_07985) nth 1547778..1548425 (+) 648 WP_000933020.1 endonuclease III -
  J5V73_RS07990 (J5V73_07990) - 1548429..1548947 (+) 519 WP_131245987.1 YpoC family protein -
  J5V73_RS07995 (J5V73_07995) - 1548974..1551715 (-) 2742 WP_215576914.1 penicillin-binding protein 1A -
  J5V73_RS08000 (J5V73_08000) recU 1551782..1552384 (-) 603 WP_105583987.1 Holliday junction resolvase RecU Machinery gene
  J5V73_RS08005 (J5V73_08005) - 1552488..1553513 (+) 1026 WP_131245985.1 DUF2515 domain-containing protein -
  J5V73_RS28605 - 1553857..1554003 (-) 147 WP_307838389.1 phage portal protein -
  J5V73_RS08010 (J5V73_08010) - 1554122..1554364 (+) 243 WP_002011865.1 hypothetical protein -
  J5V73_RS08015 (J5V73_08015) - 1554380..1554724 (+) 345 WP_002011864.1 YppE family protein -
  J5V73_RS08020 (J5V73_08020) - 1554903..1555094 (-) 192 WP_002030817.1 YppF family protein -
  J5V73_RS08025 (J5V73_08025) - 1555272..1555862 (+) 591 WP_113733895.1 YppG family protein -
  J5V73_RS08030 (J5V73_08030) - 1556019..1556456 (+) 438 WP_002189016.1 CotD family spore coat protein -
  J5V73_RS08035 (J5V73_08035) - 1556513..1557067 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23331.59 Da        Isoelectric Point: 9.5601

>NTDB_id=550281 J5V73_RS08000 WP_105583987.1 1551782..1552384(-) (recU) [Bacillus mycoides strain JAS12/5]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGALLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=550281 J5V73_RS08000 WP_105583987.1 1551782..1552384(-) (recU) [Bacillus mycoides strain JAS12/5]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGGCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625