Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BEST7003_RS16980 Genome accession   NZ_AP012496
Coordinates   3394949..3395662 (-) Length   237 a.a.
NCBI ID   WP_003244535.1    Uniprot ID   O06978
Organism   Bacillus subtilis BEST7003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3389949..3400662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS16960 (BEST7003_3355) ghrB 3390093..3391070 (+) 978 WP_010886621.1 bifunctional glyoxylate/hydroxypyruvate reductase B -
  BEST7003_RS16965 (BEST7003_3356) psdB 3391108..3393048 (-) 1941 WP_003243432.1 lantibiotic ABC transporter permease PsdB -
  BEST7003_RS16970 (BEST7003_3357) psdA 3393023..3393802 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  BEST7003_RS16975 (BEST7003_3358) psdS 3393885..3394955 (-) 1071 WP_003242699.1 two-component sensor histidine kinase PsdS -
  BEST7003_RS16980 (BEST7003_3359) braR 3394949..3395662 (-) 714 WP_003244535.1 two-component system response regulator PsdR Regulator
  BEST7003_RS16985 (BEST7003_3360) yvzJ 3395809..3396018 (+) 210 WP_003243327.1 lipoprotein -
  BEST7003_RS16990 (BEST7003_3361) yvcN 3396054..3396818 (-) 765 WP_009968228.1 arylamine N-acetyltransferase -
  BEST7003_RS16995 (BEST7003_3362) crh 3396819..3397076 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  BEST7003_RS17000 (BEST7003_3363) whiA 3397100..3398050 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  BEST7003_RS17005 (BEST7003_3364) mgfK 3398073..3399026 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  BEST7003_RS17010 (BEST7003_3365) rapZ 3399028..3399915 (-) 888 WP_003243903.1 RNase adapter RapZ -
  BEST7003_RS17015 (BEST7003_3366) rppI 3399940..3400416 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27514.39 Da        Isoelectric Point: 4.6062

>NTDB_id=55028 BEST7003_RS16980 WP_003244535.1 3394949..3395662(-) (braR) [Bacillus subtilis BEST7003]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=55028 BEST7003_RS16980 WP_003244535.1 3394949..3395662(-) (braR) [Bacillus subtilis BEST7003]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O06978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43

Multiple sequence alignment