Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CYAN10605_RS03115 Genome accession   NC_019776
Coordinates   767538..767912 (+) Length   124 a.a.
NCBI ID   WP_041922412.1    Uniprot ID   A0A844GN83
Organism   Cyanobacterium aponinum PCC 10605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 762538..772912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYAN10605_RS03105 (Cyan10605_0614) - 765839..766366 (+) 528 WP_015218484.1 tetratricopeptide repeat protein -
  CYAN10605_RS03110 (Cyan10605_0615) thiL 766437..767426 (+) 990 WP_015218485.1 thiamine-phosphate kinase -
  CYAN10605_RS03115 (Cyan10605_0616) pilH 767538..767912 (+) 375 WP_041922412.1 PleD family two-component system response regulator Machinery gene
  CYAN10605_RS03120 (Cyan10605_0617) trmFO 768078..769481 (+) 1404 WP_015218487.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CYAN10605_RS03125 (Cyan10605_0618) purL 769790..772069 (+) 2280 WP_015218488.1 phosphoribosylformylglycinamidine synthase subunit PurL -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14118.50 Da        Isoelectric Point: 6.7140

>NTDB_id=55027 CYAN10605_RS03115 WP_041922412.1 767538..767912(+) (pilH) [Cyanobacterium aponinum PCC 10605]
MIKILVVDDNHTPREVISEALKQFNIQVTEASNGVEATKIIEKEKFNLVITDVVMPEMNGYELCRWIKSNPGTEKVPVII
CSTKGEEFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNVG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=55027 CYAN10605_RS03115 WP_041922412.1 767538..767912(+) (pilH) [Cyanobacterium aponinum PCC 10605]
ATGATTAAAATTTTAGTAGTCGATGATAATCACACACCCAGAGAAGTGATCAGCGAAGCACTGAAACAGTTTAATATCCA
AGTAACCGAAGCATCCAATGGGGTAGAGGCAACCAAAATAATTGAGAAAGAAAAATTTAACCTCGTAATTACTGATGTAG
TGATGCCTGAAATGAATGGCTATGAATTATGTCGCTGGATAAAAAGTAATCCAGGAACAGAAAAAGTCCCTGTAATCATT
TGCTCTACAAAAGGAGAAGAATTTGATATTCACTGGGCAACAAAACAAGGGGCGGATGCTTATATTATTAAGCCTTTTAA
AACGATGGAATTATTGAAAACCATTAAATATTTACTTAAGCATAATGTAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.372

97.581

0.54

Multiple sequence alignment