Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   J5W00_RS06440 Genome accession   NZ_CP072055
Coordinates   1261435..1261758 (-) Length   107 a.a.
NCBI ID   WP_002030429.1    Uniprot ID   A0A084J505
Organism   Bacillus mycoides strain JAS85/1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256435..1266758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5W00_RS06415 (J5W00_06415) - 1256614..1257900 (+) 1287 WP_002126097.1 D-alanyl-D-alanine carboxypeptidase family protein -
  J5W00_RS06420 (J5W00_06420) sipW 1258097..1258666 (+) 570 WP_002064334.1 signal peptidase I SipW -
  J5W00_RS06425 (J5W00_06425) - 1258733..1259320 (+) 588 WP_000172837.1 CalY family protein -
  J5W00_RS06430 (J5W00_06430) - 1259482..1260315 (+) 834 WP_002168858.1 DUF4047 domain-containing protein -
  J5W00_RS06435 (J5W00_06435) calY 1260759..1261352 (+) 594 WP_002126106.1 biofilm matrix protein CalY -
  J5W00_RS06440 (J5W00_06440) sinR 1261435..1261758 (-) 324 WP_002030429.1 helix-turn-helix domain-containing protein Regulator
  J5W00_RS06445 (J5W00_06445) - 1261838..1261972 (-) 135 WP_002011474.1 anti-repressor SinI family protein -
  J5W00_RS06450 (J5W00_06450) inhA1 1262315..1264702 (+) 2388 WP_215560991.1 M6 family metalloprotease immune inhibitor InhA1 -
  J5W00_RS06455 (J5W00_06455) - 1264873..1266240 (+) 1368 WP_002126112.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12274.04 Da        Isoelectric Point: 7.2050

>NTDB_id=550229 J5W00_RS06440 WP_002030429.1 1261435..1261758(-) (sinR) [Bacillus mycoides strain JAS85/1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTTEGHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTQWKKNQQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=550229 J5W00_RS06440 WP_002030429.1 1261435..1261758(-) (sinR) [Bacillus mycoides strain JAS85/1]
ATGATAGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGCATTTCATTAACAGAACTCGCCGAAAAAGCTGGTGTCGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCTATTCAGTTTCTTGAAAAAATTGCAGCTGTTC
TACAAATTCCAGTTGATACTTTACTTCACGATGAAACAACAACGGAGGGTCACCTAGACTCCGAATGGACACAGCTCGTT
AAAGATGCGATGAGCTCTGGTGTCTCAAAAGAACAGTTTCGTGAATTTCTCGAATTTACACAATGGAAGAAAAATCAACA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084J505

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692