Detailed information NTG0550129

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LT922_RS00270
• Genome accession: NZ_CP089445
• Coordinates: 45527..46552 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain 5-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 40527..51552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT922_RS00240 (LT922_00240)	zapB	40611..40856 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
LT922_RS00245 (LT922_00245)	rraA	40941..41426 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LT922_RS00250 (LT922_00250)	menA	41519..42445 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LT922_RS00255 (LT922_00255)	hslU	42512..43843 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
LT922_RS00260 (LT922_00260)	hslV	43853..44383 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LT922_RS00265 (LT922_00265)	ftsN	44476..45435 (-)	960	WP_000068834.1	cell division protein FtsN	-
LT922_RS00270 (LT922_00270)	cytR	45527..46552 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
LT922_RS00275 (LT922_00275)	priA	46708..48906 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
LT922_RS00280 (LT922_00280)	rpmE	49109..49321 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
LT922_RS00285 (LT922_00285)	yiiX	49382..49990 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
LT922_RS00290 (LT922_00290)	metJ	50050..50367 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=550129 LT922_RS00270 WP_000644908.1 45527..46552(-) (cytR) [Escherichia coli strain 5-1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=550129 LT922_RS00270 WP_000644908.1 45527..46552(-) (cytR) [Escherichia coli strain 5-1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625