Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LUX31_RS13655 Genome accession   NZ_CP089312
Coordinates   3141507..3142490 (-) Length   327 a.a.
NCBI ID   WP_235475048.1    Uniprot ID   -
Organism   Streptomyces sp. GQFP     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3136507..3147490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX31_RS13635 (LUX31_13635) mshB 3136673..3137563 (-) 891 WP_235475045.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  LUX31_RS13640 (LUX31_13640) - 3137781..3137975 (-) 195 WP_006375723.1 hypothetical protein -
  LUX31_RS13645 (LUX31_13645) - 3138152..3140272 (+) 2121 WP_235475046.1 prolyl oligopeptidase family serine peptidase -
  LUX31_RS13650 (LUX31_13650) - 3140432..3141523 (-) 1092 WP_235475047.1 dipeptide ABC transporter ATP-binding protein -
  LUX31_RS13655 (LUX31_13655) amiE 3141507..3142490 (-) 984 WP_235475048.1 ABC transporter ATP-binding protein Regulator
  LUX31_RS13660 (LUX31_13660) - 3142499..3143488 (-) 990 WP_235475049.1 ABC transporter permease -
  LUX31_RS13665 (LUX31_13665) - 3143481..3144404 (-) 924 WP_235475050.1 ABC transporter permease -
  LUX31_RS13670 (LUX31_13670) - 3144459..3146102 (-) 1644 WP_235475051.1 ABC transporter substrate-binding protein -
  LUX31_RS13675 (LUX31_13675) - 3146406..3147398 (+) 993 WP_235479910.1 ABC transporter permease -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35946.56 Da        Isoelectric Point: 5.8787

>NTDB_id=550087 LUX31_RS13655 WP_235475048.1 3141507..3142490(-) (amiE) [Streptomyces sp. GQFP]
MLLEVRDLHVEFRTRDGVAKAVNGVTYSVDAGETLAVLGESGSGKSVTAQAVMGILDIPPGRITGGEVLFQGQDLLTFKE
EERRKVRGAQMAMIFQDALSSLNPVLSVGDQLGEMFTVHRGMSRKDARTKAVELMDRVRIPAAAQRVRDYPHQFSGGMRQ
RIMIAMALALEPALIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVESAPVHD
IYKAPAHPYTKGLLESIPRLDQKGRELYAIKGLPPNLMNIPPGCAFNPRCPMAQDICRTEVPPLAEVDEDRRSACFFWRE
TLDAHNH

Nucleotide


Download         Length: 984 bp        

>NTDB_id=550087 LUX31_RS13655 WP_235475048.1 3141507..3142490(-) (amiE) [Streptomyces sp. GQFP]
ATGCTCCTCGAAGTACGCGACCTGCACGTGGAGTTCAGAACCCGGGACGGGGTCGCCAAGGCCGTCAACGGCGTCACCTA
CAGCGTGGACGCGGGCGAGACGCTGGCCGTGCTCGGCGAGTCCGGCTCAGGCAAGTCGGTCACGGCCCAGGCGGTCATGG
GCATCCTCGACATCCCGCCCGGAAGGATCACCGGCGGCGAAGTCCTGTTCCAGGGCCAGGACTTGCTCACCTTCAAGGAG
GAGGAGCGCCGCAAGGTCCGGGGCGCCCAGATGGCGATGATCTTCCAGGACGCGCTGTCGTCCCTCAACCCCGTGCTCAG
CGTGGGCGACCAGCTCGGCGAGATGTTCACGGTCCACCGAGGAATGTCCCGAAAGGACGCCCGCACCAAGGCGGTTGAGC
TGATGGACCGGGTCCGCATCCCTGCCGCCGCCCAGCGCGTACGGGACTATCCGCACCAGTTCTCCGGAGGCATGCGCCAG
CGCATCATGATCGCCATGGCGCTGGCCCTGGAACCGGCCCTGATCATCGCCGACGAACCGACGACGGCCCTCGACGTGAC
TGTCCAGGCCCAAGTCATGGATCTGCTGGCCGAGTTGCAGCGCGAGCTGAACATGGGCCTGATCCTCATCACCCACGACC
TCGGGGTTGTCGCGGACGTCGCCGACAAGATCGCCGTCATGTACGCGGGCCGGATCGTCGAGTCGGCGCCGGTCCACGAC
ATCTACAAGGCGCCCGCCCACCCGTACACCAAGGGCCTGTTGGAGTCGATCCCGCGCCTCGACCAGAAGGGCCGCGAGCT
GTACGCCATCAAGGGCCTCCCGCCGAACCTGATGAACATCCCGCCGGGCTGCGCCTTCAACCCGCGCTGCCCGATGGCCC
AGGACATCTGCCGTACGGAGGTACCGCCGTTGGCGGAGGTCGACGAGGACCGCAGAAGCGCCTGCTTCTTCTGGAGGGAG
ACGCTCGATGCCCACAACCACTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.417

98.165

0.456
  amiE Streptococcus thermophilus LMG 18311

46.106

98.165

0.453
  amiE Streptococcus thermophilus LMD-9

46.106

98.165

0.453
  oppD Streptococcus mutans UA159

46.203

96.636

0.446