Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LUX31_RS05565 Genome accession   NZ_CP089312
Coordinates   1268668..1269678 (-) Length   336 a.a.
NCBI ID   WP_235473544.1    Uniprot ID   -
Organism   Streptomyces sp. GQFP     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263668..1274678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX31_RS05550 (LUX31_05550) - 1263802..1267158 (-) 3357 WP_235473541.1 hypothetical protein -
  LUX31_RS05555 (LUX31_05555) - 1267239..1267493 (-) 255 WP_235473542.1 WhiB family transcriptional regulator -
  LUX31_RS05560 (LUX31_05560) - 1267808..1268602 (+) 795 WP_235473543.1 VOC family protein -
  LUX31_RS05565 (LUX31_05565) cytR 1268668..1269678 (-) 1011 WP_235473544.1 LacI family DNA-binding transcriptional regulator Regulator
  LUX31_RS05570 (LUX31_05570) - 1269756..1270796 (-) 1041 WP_235473545.1 multicopper oxidase domain-containing protein -
  LUX31_RS05575 (LUX31_05575) - 1271018..1273498 (+) 2481 WP_235473547.1 ThuA domain-containing protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 35902.51 Da        Isoelectric Point: 5.4581

>NTDB_id=550065 LUX31_RS05565 WP_235473544.1 1268668..1269678(-) (cytR) [Streptomyces sp. GQFP]
MTETASRPTLEAVAARAGVSRATASRVVNGGDGVREPLVERVRQAVEELGYVPNQAARSLVTRRHDAVAVVIAEPETRVF
ADPFFALQLRGISKELTAHDSQLVLLLTEGRDDHSRVGRYLAGGHVDGALVFSLHLDDPLPGLVQRAGVPTVFGGRPGWS
EGTRDAVYVDSDNRGGARAAVQHLVDLGRTRIAHITGPLDQTSAADRLDGFREVAPDADPRLIAESDFTPAGGERAMREL
LDRRPDLDAVFAANDLAASGVLRVLRERGRRVPSDVAVVGFDDMLAVAEQTDPALTTVRQPIEEMGRLMARLLLGGGVDA
AASVVLPTTLVRRDSA

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=550065 LUX31_RS05565 WP_235473544.1 1268668..1269678(-) (cytR) [Streptomyces sp. GQFP]
GTGACCGAAACCGCGTCGCGTCCCACCCTGGAGGCCGTCGCCGCACGGGCAGGGGTCTCCCGGGCCACCGCGTCGCGGGT
CGTGAACGGCGGGGACGGCGTACGCGAACCCCTTGTCGAACGGGTCAGGCAGGCCGTGGAGGAACTCGGATACGTGCCCA
ACCAGGCGGCCCGCTCCCTGGTGACCCGGCGGCACGACGCCGTCGCCGTCGTCATCGCCGAGCCGGAGACCCGGGTCTTC
GCCGACCCCTTCTTCGCCCTCCAACTCCGGGGGATCAGCAAGGAGTTGACCGCCCACGACTCCCAGCTCGTGCTGCTCCT
CACCGAAGGGCGCGACGACCACTCCCGCGTCGGCCGGTATCTCGCCGGCGGGCATGTCGACGGCGCGCTCGTCTTCTCCC
TGCACCTCGACGACCCGCTGCCCGGCCTGGTCCAGCGTGCCGGCGTGCCCACCGTGTTCGGCGGGCGGCCCGGCTGGAGC
GAGGGCACGCGTGACGCCGTGTACGTCGACAGCGACAACCGGGGCGGCGCCCGGGCCGCCGTCCAGCATCTCGTCGACCT
CGGGCGGACGCGCATCGCGCACATCACGGGCCCCCTCGACCAGACCTCGGCGGCGGACCGGCTCGACGGGTTCCGGGAGG
TCGCGCCCGACGCGGACCCGCGACTGATCGCCGAGAGCGACTTCACGCCGGCCGGAGGGGAGCGCGCGATGCGTGAACTG
TTGGACCGGCGTCCGGACTTGGACGCCGTGTTCGCCGCGAATGATCTCGCGGCCTCGGGTGTTCTGCGTGTTCTGCGTGA
ACGTGGGCGACGGGTGCCGTCGGATGTTGCCGTGGTCGGGTTCGACGACATGTTGGCTGTCGCCGAGCAGACGGATCCGG
CGTTGACGACGGTTCGTCAGCCCATCGAGGAGATGGGGAGGTTGATGGCGCGGCTGTTGTTGGGGGGTGGGGTGGATGCG
GCGGCCAGCGTGGTGCTGCCGACGACACTTGTTCGGCGCGACTCTGCCTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-335)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.588

100

0.36