Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LUX31_RS01370 Genome accession   NZ_CP089312
Coordinates   285807..286799 (-) Length   330 a.a.
NCBI ID   WP_235472663.1    Uniprot ID   -
Organism   Streptomyces sp. GQFP     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 280807..291799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUX31_RS01345 (LUX31_01345) - 281483..283252 (+) 1770 WP_235472658.1 ABC transporter ATP-binding protein -
  LUX31_RS01350 (LUX31_01350) - 283302..283784 (-) 483 WP_235472659.1 VOC family protein -
  LUX31_RS01355 (LUX31_01355) - 283892..284503 (-) 612 WP_235472660.1 DinB family protein -
  LUX31_RS01360 (LUX31_01360) - 284544..284933 (-) 390 WP_235472661.1 VOC family protein -
  LUX31_RS01365 (LUX31_01365) - 284986..285810 (-) 825 WP_235472662.1 ATP-binding cassette domain-containing protein -
  LUX31_RS01370 (LUX31_01370) amiE 285807..286799 (-) 993 WP_235472663.1 ABC transporter ATP-binding protein Regulator
  LUX31_RS01375 (LUX31_01375) - 286807..287673 (-) 867 WP_235472664.1 ABC transporter permease -
  LUX31_RS01380 (LUX31_01380) - 287670..288623 (-) 954 WP_235472665.1 ABC transporter permease -
  LUX31_RS01385 (LUX31_01385) - 288629..290275 (-) 1647 WP_235472666.1 ABC transporter substrate-binding protein -
  LUX31_RS01390 (LUX31_01390) - 290329..291483 (-) 1155 WP_235472667.1 C45 family peptidase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35486.79 Da        Isoelectric Point: 6.9535

>NTDB_id=550059 LUX31_RS01370 WP_235472663.1 285807..286799(-) (amiE) [Streptomyces sp. GQFP]
MLLDIENLTVQLPGAARPLLADISLTVRTGEVVGLVGESGSGKSTTAKAALRILPDEARASGRALVDGTDVLTMNGPRLR
EHRARTVAMVHQDPRSALNPVRRVGDFLVERLLATGQLDKRAARLRAVELLDAVGLPDPEQRIRQHPHEMSGGMLQRVVI
AGALAAEPRLLLADEATSALDVTTQAEILALLRKLRAERDLGLLFITHDLHLAAAYCDRVYVMYAGRIVEEQQAGRLFTD
ARHPYTRGLLDCSPELGDTTRVLRPIPGKPPSLAEHFTGCPFAPRCPHAEPECESGPPELVPVEGGGTAACRRLPDLSAQ
PAAPAVRSTS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=550059 LUX31_RS01370 WP_235472663.1 285807..286799(-) (amiE) [Streptomyces sp. GQFP]
ATGCTGCTCGACATCGAGAACCTGACCGTCCAACTCCCGGGCGCCGCCCGGCCGTTGCTCGCCGATATCTCCCTCACGGT
CCGCACCGGCGAGGTCGTCGGACTCGTCGGAGAATCCGGCTCCGGCAAGTCCACCACCGCCAAGGCCGCCCTGCGTATCC
TTCCCGACGAAGCCCGGGCCAGCGGCCGGGCCCTGGTCGACGGCACCGACGTGCTCACGATGAACGGTCCGCGCCTGCGC
GAACACCGGGCCAGGACGGTCGCGATGGTCCACCAGGACCCCCGCTCCGCACTCAACCCGGTCCGCCGCGTCGGCGACTT
CCTCGTCGAACGGCTCCTCGCCACCGGGCAGTTGGACAAGCGCGCCGCCCGCCTCCGCGCCGTCGAACTCCTCGACGCCG
TCGGCCTGCCCGACCCGGAACAGCGCATCCGCCAGCACCCGCACGAGATGTCCGGCGGCATGCTGCAACGCGTCGTCATC
GCCGGCGCCCTCGCCGCCGAACCCCGCCTCCTCCTCGCCGACGAGGCGACCAGCGCCCTGGACGTCACCACCCAGGCCGA
GATCCTCGCCCTGCTGCGCAAGCTGCGCGCCGAGCGCGACCTCGGGCTCCTCTTCATCACCCACGACCTGCATCTCGCCG
CCGCCTACTGCGACCGCGTGTACGTCATGTACGCGGGCCGGATCGTCGAGGAACAGCAGGCCGGCCGCCTCTTCACGGAC
GCCCGGCACCCCTACACCCGAGGCCTGCTCGACTGCTCGCCCGAACTGGGCGACACCACCCGGGTGCTGCGACCGATCCC
CGGCAAACCCCCGTCCCTCGCCGAGCACTTCACCGGCTGCCCGTTCGCCCCGCGCTGCCCCCACGCCGAGCCCGAGTGCG
AGAGCGGGCCGCCCGAGCTGGTCCCCGTCGAGGGCGGCGGCACGGCAGCCTGCCGACGCCTCCCCGACCTGTCCGCGCAA
CCCGCCGCCCCGGCAGTCAGGAGTACGTCATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(229-293)

ABC transporter (ABC_tran)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.387

93.939

0.361
  amiE Streptococcus thermophilus LMD-9

38.387

93.939

0.361
  amiE Streptococcus salivarius strain HSISS4

39.016

92.424

0.361
  oppD Streptococcus mutans UA159

37.421

96.364

0.361