Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LUA78_RS02865 Genome accession   NZ_CP089283
Coordinates   630704..631753 (+) Length   349 a.a.
NCBI ID   WP_234618138.1    Uniprot ID   -
Organism   Helicobacter pylori strain J99 derivative isolate D1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 625704..636753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA78_RS02845 (LUA78_02845) - 625727..626470 (+) 744 WP_010882609.1 carbonic anhydrase -
  LUA78_RS02850 (LUA78_02850) - 626701..627852 (-) 1152 WP_010882610.1 DUF874 family protein -
  LUA78_RS02855 (LUA78_02855) asd 628287..629327 (-) 1041 WP_000860865.1 aspartate-semialdehyde dehydrogenase -
  LUA78_RS02860 (LUA78_02860) hisS 629314..630642 (-) 1329 WP_000632487.1 histidine--tRNA ligase -
  LUA78_RS02865 (LUA78_02865) waaF 630704..631753 (+) 1050 WP_234618138.1 lipopolysaccharide heptosyltransferase II Regulator
  LUA78_RS02870 (LUA78_02870) - 631942..632106 (-) 165 WP_000744175.1 hypothetical protein -
  LUA78_RS02875 (LUA78_02875) fusA 632649..634727 (-) 2079 WP_000101888.1 elongation factor G -
  LUA78_RS02880 (LUA78_02880) rpsG 634739..635206 (-) 468 WP_001254355.1 30S ribosomal protein S7 -
  LUA78_RS02885 (LUA78_02885) rpsL 635222..635629 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39500.26 Da        Isoelectric Point: 9.7212

>NTDB_id=550028 LUA78_RS02865 WP_234618138.1 630704..631753(+) (waaF) [Helicobacter pylori strain J99 derivative isolate D1]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAVALLEKGHEIYFFGAKEDAIVSEEILKSVKNLLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHALLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=550028 LUA78_RS02865 WP_234618138.1 630704..631753(+) (waaF) [Helicobacter pylori strain J99 derivative isolate D1]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTAGGTCCAACCATTACGTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAATATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCGGTTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GAGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAACTTATTGAAAAACCCCTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACGCTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361