Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   LSG45_RS26835 Genome accession   NZ_CP089238
Coordinates   5813907..5814431 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5808907..5819431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS26820 (LSG45_26820) aroB 5810023..5811129 (-) 1107 WP_058155455.1 3-dehydroquinate synthase -
  LSG45_RS26825 (LSG45_26825) aroK 5811179..5811697 (-) 519 WP_003095833.1 shikimate kinase AroK -
  LSG45_RS26830 (LSG45_26830) pilQ 5811709..5813853 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  LSG45_RS26835 (LSG45_26835) comL/pilP 5813907..5814431 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  LSG45_RS26840 (LSG45_26840) pilO 5814428..5815051 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  LSG45_RS26845 (LSG45_26845) pilN 5815048..5815644 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  LSG45_RS26850 (LSG45_26850) pilM 5815644..5816708 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  LSG45_RS26855 (LSG45_26855) - 5816893..5819364 (+) 2472 WP_234575126.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=549834 LSG45_RS26835 WP_003095836.1 5813907..5814431(-) (comL/pilP) [Pseudomonas aeruginosa strain JNQH-PA033]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=549834 LSG45_RS26835 WP_003095836.1 5813907..5814431(-) (comL/pilP) [Pseudomonas aeruginosa strain JNQH-PA033]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362