Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LSG45_RS09445 Genome accession   NZ_CP089238
Coordinates   2014522..2014851 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2009522..2019851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS09430 (LSG45_09430) - 2010322..2011278 (+) 957 Protein_1873 UDP-glucose 4-epimerase family protein -
  LSG45_RS09435 (LSG45_09435) - 2011280..2012299 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  LSG45_RS09440 (LSG45_09440) - 2012334..2014331 (+) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  LSG45_RS09445 (LSG45_09445) comEA/comE1 2014522..2014851 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  LSG45_RS09455 (LSG45_09455) - 2015068..2016264 (-) 1197 WP_124089807.1 amino acid aminotransferase -
  LSG45_RS09460 (LSG45_09460) uvrB 2016452..2018464 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=549780 LSG45_RS09445 WP_003091430.1 2014522..2014851(+) (comEA/comE1) [Pseudomonas aeruginosa strain JNQH-PA033]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=549780 LSG45_RS09445 WP_003091430.1 2014522..2014851(+) (comEA/comE1) [Pseudomonas aeruginosa strain JNQH-PA033]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385