Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | J5D23_RS07115 | Genome accession | NZ_CP071987 |
| Coordinates | 1509457..1510032 (+) | Length | 191 a.a. |
| NCBI ID | WP_209613916.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain MT5136 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1504457..1515032
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J5D23_RS07090 (J5D23_07090) | uvrD | 1505148..1507193 (+) | 2046 | WP_209614393.1 | ATP-dependent helicase | - |
| J5D23_RS07095 (J5D23_07095) | flgA | 1507190..1507846 (+) | 657 | WP_209613914.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| J5D23_RS07100 (J5D23_07100) | - | 1507856..1508419 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| J5D23_RS07105 (J5D23_07105) | coaD | 1508419..1508892 (+) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| J5D23_RS07110 (J5D23_07110) | tmk | 1508894..1509469 (+) | 576 | WP_209613915.1 | dTMP kinase | - |
| J5D23_RS07115 (J5D23_07115) | comFC | 1509457..1510032 (+) | 576 | WP_209613916.1 | ComF family protein | Machinery gene |
| J5D23_RS07120 (J5D23_07120) | - | 1510064..1512100 (+) | 2037 | WP_209613917.1 | N-6 DNA methylase | - |
| J5D23_RS08155 (J5D23_07125) | - | 1512097..1512741 (+) | 645 | WP_209613918.1 | restriction endonuclease subunit S | - |
| J5D23_RS08160 (J5D23_07130) | - | 1512768..1513310 (+) | 543 | WP_338154825.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21348.86 Da Isoelectric Point: 8.9024
>NTDB_id=549761 J5D23_RS07115 WP_209613916.1 1509457..1510032(+) (comFC) [Helicobacter pylori strain MT5136]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFRGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFRGDENLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=549761 J5D23_RS07115 WP_209613916.1 1509457..1510032(+) (comFC) [Helicobacter pylori strain MT5136]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CACTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAGGGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CACTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATACCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTATGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAGGGGCGATGAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.812 |
100 |
0.958 |