Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LSG45_RS02035 Genome accession   NZ_CP089238
Coordinates   431609..432970 (+) Length   453 a.a.
NCBI ID   WP_234575370.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA033     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426609..437970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG45_RS02015 (LSG45_02015) - 427446..428012 (-) 567 WP_003084491.1 hypothetical protein -
  LSG45_RS02020 (LSG45_02020) rsmD 428015..428611 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LSG45_RS02025 (LSG45_02025) - 428611..430098 (-) 1488 WP_058160873.1 M16 family metallopeptidase -
  LSG45_RS02030 (LSG45_02030) - 430091..431488 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  LSG45_RS02035 (LSG45_02035) pilA 431609..432970 (+) 1362 WP_234575370.1 signal recognition particle-docking protein FtsY Machinery gene
  LSG45_RS02040 (LSG45_02040) ftsE 432967..433638 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LSG45_RS02045 (LSG45_02045) ftsX 433638..434645 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LSG45_RS02050 (LSG45_02050) rpoH 434759..435613 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LSG45_RS02055 (LSG45_02055) - 435678..436283 (+) 606 WP_003084511.1 hypothetical protein -
  LSG45_RS02060 (LSG45_02060) mtgA 436288..437019 (-) 732 WP_023100133.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LSG45_RS02065 (LSG45_02065) - 437056..437433 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  LSG45_RS02070 (LSG45_02070) thiS 437536..437736 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48209.60 Da        Isoelectric Point: 4.5244

>NTDB_id=549759 LSG45_RS02035 WP_234575370.1 431609..432970(+) (pilA) [Pseudomonas aeruginosa strain JNQH-PA033]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFDRLRQGLSKTSA
SIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQ
VDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFD
AVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALT
KLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=549759 LSG45_RS02035 WP_234575370.1 431609..432970(+) (pilA) [Pseudomonas aeruginosa strain JNQH-PA033]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAACCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTCGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCG
CCGCTCCGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGACCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCC
AGCATCGGCGAAGGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCG
CCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGC
TGGCCGACAGCGGCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAG
GTCGACGTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCT
GGCGAAGAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGT
TGCAGGTCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGAC
GCGGTGCAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCT
GATGGAGGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCG
ACGCCGGCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACC
AAACTGGACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGT
CGGCGAGGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCAT
GA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(248-447)

SRP54-type protein, helical bundle domain (SRP54_N)

(163-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

46.897

96.026

0.45