Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D23_RS06690 Genome accession   NZ_CP071987
Coordinates   1410800..1412113 (-) Length   437 a.a.
NCBI ID   WP_209613871.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5136     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405800..1417113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D23_RS06660 (J5D23_06660) nadC 1406263..1407084 (-) 822 WP_209613866.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D23_RS06665 (J5D23_06665) nadA 1407084..1408094 (-) 1011 WP_209613867.1 quinolinate synthase NadA -
  J5D23_RS06670 (J5D23_06670) - 1408084..1408887 (-) 804 WP_209613868.1 phosphatidylserine decarboxylase -
  J5D23_RS06675 (J5D23_06675) - 1408881..1409387 (-) 507 WP_000953090.1 hypothetical protein -
  J5D23_RS06680 (J5D23_06680) - 1409400..1409894 (-) 495 WP_209613869.1 hypothetical protein -
  J5D23_RS06685 (J5D23_06685) mqnP 1409887..1410729 (-) 843 WP_249936485.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D23_RS06690 (J5D23_06690) comEC/comE3 1410800..1412113 (-) 1314 WP_209613871.1 ComEC/Rec2 family competence protein Machinery gene
  J5D23_RS06695 (J5D23_06695) - 1412110..1413576 (-) 1467 WP_209613872.1 replicative DNA helicase -
  J5D23_RS06700 (J5D23_06700) - 1413587..1414981 (-) 1395 WP_209613873.1 NAD(P)H-hydrate dehydratase -
  J5D23_RS06705 (J5D23_06705) crdS 1414984..1416186 (-) 1203 WP_209614391.1 HAMP domain-containing sensor histidine kinase -
  J5D23_RS06710 (J5D23_06710) crdR 1416152..1416793 (-) 642 WP_001169749.1 copper response regulator transcription factor CrdR -
  J5D23_RS06715 (J5D23_06715) - 1416930..1417019 (-) 90 Protein_1312 anthranilate synthase component I -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50244.08 Da        Isoelectric Point: 9.8459

>NTDB_id=549759 J5D23_RS06690 WP_209613871.1 1410800..1412113(-) (comEC/comE3) [Helicobacter pylori strain MT5136]
MKDKTFHGAFDLLSTPKEYSWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549759 J5D23_RS06690 WP_209613871.1 1410800..1412113(-) (comEC/comE3) [Helicobacter pylori strain MT5136]
TTGAAAGATAAAACCTTTCATGGGGCGTTTGATTTGCTTTCAACCCCCAAAGAATACTCATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCACCCATTCCAACGCTTTGGTGGGCAATTTGTATCGAGCGCTCTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATTGCTTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTGTTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938