Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   J5D23_RS00095 Genome accession   NZ_CP071987
Coordinates   14682..14945 (+) Length   87 a.a.
NCBI ID   WP_187892425.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5136     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9682..19945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D23_RS00070 (J5D23_00070) groES 9703..10059 (-) 357 WP_120874700.1 co-chaperone GroES -
  J5D23_RS00075 (J5D23_00075) dnaG 10343..12022 (+) 1680 WP_209613988.1 DNA primase -
  J5D23_RS00080 (J5D23_00080) - 12019..13071 (+) 1053 WP_209613989.1 MnmA/TRMU family protein -
  J5D23_RS00085 (J5D23_00085) - 13429..14256 (+) 828 WP_209613990.1 DUF5718 family protein -
  J5D23_RS00090 (J5D23_00090) comB2 14401..14682 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  J5D23_RS00095 (J5D23_00095) comB3 14682..14945 (+) 264 WP_187892425.1 competence protein ComB Machinery gene
  J5D23_RS00100 (J5D23_00100) comB4 14947..17310 (+) 2364 WP_209613991.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5D23_RS00110 (J5D23_00110) - 17567..18955 (+) 1389 WP_165561955.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.11 Da        Isoelectric Point: 9.5290

>NTDB_id=549744 J5D23_RS00095 WP_187892425.1 14682..14945(+) (comB3) [Helicobacter pylori strain MT5136]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLVLFSALEFFDEDIADIIIAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=549744 J5D23_RS00095 WP_187892425.1 14682..14945(+) (comB3) [Helicobacter pylori strain MT5136]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAGATTTCGGTTAAAGAAAAGTTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATATTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTGGTGCTCTTTAGCGCGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTATCGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966