Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D25_RS06680 Genome accession   NZ_CP071986
Coordinates   1410778..1412091 (-) Length   437 a.a.
NCBI ID   WP_209553769.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5124     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405778..1417091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D25_RS06650 (J5D25_06650) nadC 1406241..1407062 (-) 822 WP_187866776.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D25_RS06655 (J5D25_06655) nadA 1407062..1408072 (-) 1011 WP_209553765.1 quinolinate synthase NadA -
  J5D25_RS06660 (J5D25_06660) - 1408059..1408865 (-) 807 WP_209553766.1 phosphatidylserine decarboxylase -
  J5D25_RS06665 (J5D25_06665) - 1408859..1409365 (-) 507 WP_000953090.1 hypothetical protein -
  J5D25_RS06670 (J5D25_06670) - 1409378..1409872 (-) 495 WP_209553767.1 hypothetical protein -
  J5D25_RS06675 (J5D25_06675) mqnP 1409865..1410707 (-) 843 WP_249936719.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D25_RS06680 (J5D25_06680) comEC/comE3 1410778..1412091 (-) 1314 WP_209553769.1 ComEC/Rec2 family competence protein Machinery gene
  J5D25_RS06685 (J5D25_06685) - 1412088..1413548 (-) 1461 WP_209505687.1 replicative DNA helicase -
  J5D25_RS06690 (J5D25_06690) - 1413559..1414953 (-) 1395 WP_209553770.1 NAD(P)H-hydrate dehydratase -
  J5D25_RS06695 (J5D25_06695) crdS 1414956..1416167 (-) 1212 WP_209554508.1 HAMP domain-containing sensor histidine kinase -
  J5D25_RS06700 (J5D25_06700) crdR 1416133..1416774 (-) 642 WP_001169749.1 copper response regulator transcription factor CrdR -
  J5D25_RS08115 - 1416862..1416936 (-) 75 Protein_1329 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50255.06 Da        Isoelectric Point: 9.8459

>NTDB_id=549740 J5D25_RS06680 WP_209553769.1 1410778..1412091(-) (comEC/comE3) [Helicobacter pylori strain MT5124]
MKDKTFQGAFDLLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTSLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549740 J5D25_RS06680 WP_209553769.1 1410778..1412091(-) (comEC/comE3) [Helicobacter pylori strain MT5124]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGATTTGCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCACCCATTCCAACGCTTTGGTGGGCAATTTGTATCGAGCGCTCTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCTCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATTGCTTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCACTCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936