Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   J5D25_RS00205 Genome accession   NZ_CP071986
Coordinates   37801..38544 (+) Length   247 a.a.
NCBI ID   WP_209553009.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5124     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32801..43544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D25_RS00180 (J5D25_00180) panD 34950..35303 (+) 354 WP_000142255.1 aspartate 1-decarboxylase -
  J5D25_RS00185 (J5D25_00185) - 35306..35608 (+) 303 WP_000347931.1 YbaB/EbfC family nucleoid-associated protein -
  J5D25_RS00190 (J5D25_00190) - 35608..36612 (+) 1005 WP_209554406.1 PDZ domain-containing protein -
  J5D25_RS00195 (J5D25_00195) comB6 36620..37675 (+) 1056 WP_209554404.1 P-type conjugative transfer protein TrbL Machinery gene
  J5D25_RS00200 (J5D25_00200) comB7 37691..37804 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  J5D25_RS00205 (J5D25_00205) comB8 37801..38544 (+) 744 WP_209553009.1 virB8 family protein Machinery gene
  J5D25_RS00210 (J5D25_00210) comB9 38544..39530 (+) 987 WP_209553010.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  J5D25_RS00215 (J5D25_00215) - 39523..40653 (+) 1131 Protein_36 DNA type IV secretion system protein ComB10 -
  J5D25_RS00220 (J5D25_00220) - 40723..42135 (+) 1413 WP_209553899.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  J5D25_RS00225 (J5D25_00225) gmd 42176..43321 (+) 1146 WP_209553900.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28650.92 Da        Isoelectric Point: 8.9604

>NTDB_id=549730 J5D25_RS00205 WP_209553009.1 37801..38544(+) (comB8) [Helicobacter pylori strain MT5124]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVSDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDAPDFDYASMPKNPTGFKITRYSITEI
APISRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=549730 J5D25_RS00205 WP_209553009.1 37801..38544(+) (comB8) [Helicobacter pylori strain MT5124]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGCTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGATGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAGCCCAAAACAGCATTTAC
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACGCCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGATTAGTAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.955