Detailed information NTG0549728

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: J5D25_RS00195
• Genome accession: NZ_CP071986
• Coordinates: 36620..37675 (+)
• Length: 351 a.a.
• NCBI ID: WP_209554404.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5124
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31620..42675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D25_RS00165 (J5D25_00165)	-	32042..32455 (+)	414	WP_001023005.1	universal stress protein	-
J5D25_RS00170 (J5D25_00170)	-	32457..32732 (+)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
J5D25_RS00175 (J5D25_00175)	-	32732..34960 (+)	2229	WP_209553898.1	ATP-dependent Clp protease ATP-binding subunit	-
J5D25_RS00180 (J5D25_00180)	panD	34950..35303 (+)	354	WP_000142255.1	aspartate 1-decarboxylase	-
J5D25_RS00185 (J5D25_00185)	-	35306..35608 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
J5D25_RS00190 (J5D25_00190)	-	35608..36612 (+)	1005	WP_209554406.1	PDZ domain-containing protein	-
J5D25_RS00195 (J5D25_00195)	comB6	36620..37675 (+)	1056	WP_209554404.1	P-type conjugative transfer protein TrbL	Machinery gene
J5D25_RS00200 (J5D25_00200)	comB7	37691..37804 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
J5D25_RS00205 (J5D25_00205)	comB8	37801..38544 (+)	744	WP_209553009.1	virB8 family protein	Machinery gene
J5D25_RS00210 (J5D25_00210)	comB9	38544..39530 (+)	987	WP_209553010.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
J5D25_RS00215 (J5D25_00215)	-	39523..40653 (+)	1131	Protein_36	DNA type IV secretion system protein ComB10	-
J5D25_RS00220 (J5D25_00220)	-	40723..42135 (+)	1413	WP_209553899.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39659.54 Da
• Isoelectric Point: 8.8283

>NTDB_id=549728 J5D25_RS00195 WP_209554404.1 36620..37675(+) (comB6) [Helicobacter pylori strain MT5124]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIVPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQHTTTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=549728 J5D25_RS00195 WP_209554404.1 36620..37675(+) (comB6) [Helicobacter pylori strain MT5124]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGTGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGTGCCTAACATGATCGCGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATAGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTGCAACATACCA
CAACCTCGCCCGCTCCTTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.162	100	0.932