Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D26_RS06520 Genome accession   NZ_CP071985
Coordinates   1369496..1370809 (-) Length   437 a.a.
NCBI ID   WP_209508666.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5119     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1364496..1375809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D26_RS06490 (J5D26_06490) nadC 1364959..1365780 (-) 822 WP_077657355.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D26_RS06495 (J5D26_06495) nadA 1365780..1366790 (-) 1011 WP_021187309.1 quinolinate synthase NadA -
  J5D26_RS06500 (J5D26_06500) - 1366777..1367583 (-) 807 WP_209508664.1 phosphatidylserine decarboxylase -
  J5D26_RS06505 (J5D26_06505) - 1367577..1368083 (-) 507 WP_000953090.1 hypothetical protein -
  J5D26_RS06510 (J5D26_06510) - 1368096..1368590 (-) 495 WP_162973676.1 hypothetical protein -
  J5D26_RS06515 (J5D26_06515) mqnP 1368583..1369425 (-) 843 WP_249936880.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D26_RS06520 (J5D26_06520) comEC/comE3 1369496..1370809 (-) 1314 WP_209508666.1 ComEC/Rec2 family competence protein Machinery gene
  J5D26_RS06525 (J5D26_06525) - 1370806..1372272 (-) 1467 WP_209508667.1 replicative DNA helicase -
  J5D26_RS06530 (J5D26_06530) - 1372283..1373677 (-) 1395 WP_209508668.1 NAD(P)H-hydrate dehydratase -
  J5D26_RS06535 (J5D26_06535) crdS 1373680..1374882 (-) 1203 WP_209509200.1 HAMP domain-containing sensor histidine kinase -
  J5D26_RS06540 (J5D26_06540) crdR 1374848..1375489 (-) 642 WP_001169774.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50137.01 Da        Isoelectric Point: 9.8459

>NTDB_id=549721 J5D26_RS06520 WP_209508666.1 1369496..1370809(-) (comEC/comE3) [Helicobacter pylori strain MT5119]
MKDKTFQGAFELLATPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDLKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNGLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549721 J5D26_RS06520 WP_209508666.1 1369496..1370809(-) (comEC/comE3) [Helicobacter pylori strain MT5119]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTATTGGCGATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATCTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCACTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGCTCTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGTTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTCTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTATTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTGTTTTTAACG
ATTTTAAGCACGCGTTTTTTTAAGGTTTATTTAAGCATGAATGGTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941