Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BEST7003_RS08865 Genome accession   NZ_AP012496
Coordinates   1755975..1756406 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis BEST7003     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750975..1761406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEST7003_RS08845 (BEST7003_1719) spoVS 1751536..1751796 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BEST7003_RS08850 (BEST7003_1720) tdh 1752062..1753105 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  BEST7003_RS08855 (BEST7003_1721) kbl 1753118..1754296 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  BEST7003_RS08860 (BEST7003_1722) miaB 1754444..1755973 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BEST7003_RS08865 (BEST7003_1723) ymcA 1755975..1756406 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  BEST7003_RS08870 (BEST7003_1724) cotE 1756668..1757213 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  BEST7003_RS08875 (BEST7003_1725) hexA 1757346..1759922 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=54971 BEST7003_RS08865 WP_003231834.1 1755975..1756406(+) (ymcA) [Bacillus subtilis BEST7003]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=54971 BEST7003_RS08865 WP_003231834.1 1755975..1756406(+) (ymcA) [Bacillus subtilis BEST7003]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment