Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D20_RS06875 Genome accession   NZ_CP071984
Coordinates   1443241..1444554 (-) Length   437 a.a.
NCBI ID   WP_209525720.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5114     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1438241..1449554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D20_RS06845 (J5D20_06845) nadC 1438710..1439531 (-) 822 WP_000404050.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D20_RS06850 (J5D20_06850) nadA 1439531..1440535 (-) 1005 WP_209527891.1 quinolinate synthase NadA -
  J5D20_RS06855 (J5D20_06855) - 1440525..1441328 (-) 804 WP_209525716.1 phosphatidylserine decarboxylase -
  J5D20_RS06860 (J5D20_06860) - 1441322..1441828 (-) 507 WP_209525718.1 helix-turn-helix domain-containing protein -
  J5D20_RS06865 (J5D20_06865) - 1441841..1442335 (-) 495 WP_001865420.1 hypothetical protein -
  J5D20_RS06870 (J5D20_06870) mqnP 1442328..1443170 (-) 843 WP_238409734.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D20_RS06875 (J5D20_06875) comEC/comE3 1443241..1444554 (-) 1314 WP_209525720.1 ComEC/Rec2 family competence protein Machinery gene
  J5D20_RS06880 (J5D20_06880) - 1444551..1446011 (-) 1461 WP_209525722.1 replicative DNA helicase -
  J5D20_RS06885 (J5D20_06885) - 1446022..1447416 (-) 1395 WP_209527894.1 NAD(P)H-hydrate dehydratase -
  J5D20_RS06890 (J5D20_06890) crdS 1447419..1448621 (-) 1203 WP_209526657.1 HAMP domain-containing sensor histidine kinase -
  J5D20_RS06895 (J5D20_06895) crdR 1448587..1449228 (-) 642 WP_097708016.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50449.50 Da        Isoelectric Point: 9.7690

>NTDB_id=549701 J5D20_RS06875 WP_209525720.1 1443241..1444554(-) (comEC/comE3) [Helicobacter pylori strain MT5114]
MKDKTFQGAFELLATPKEYLWCGVILSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKFCSFLESLKSCFFQTYSFSLMRKQDFKSYLRHFIDSAHENALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIVLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISVSSPLWLLGAHLFLT
IVSTRFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549701 J5D20_RS06875 WP_209525720.1 1443241..1444554(-) (comEC/comE3) [Helicobacter pylori strain MT5114]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGATCAACCTCTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTAAACG
CTCAAATCTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTGAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAATTTTGCTC
ATTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTGATGCGAAAACAAGATTTCAAATCGTATT
TGCGCCATTTCATTGATAGTGCTCATGAAAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAGGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCATGAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATTTTGAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGTTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCGGTTTCTTCACCCTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTGTAAGCACGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938