Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J5D20_RS01630 Genome accession   NZ_CP071984
Coordinates   342841..343245 (+) Length   134 a.a.
NCBI ID   WP_209526188.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337841..348245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D20_RS01595 (J5D20_01595) - 338019..338957 (-) 939 WP_209528132.1 tetraacyldisaccharide 4'-kinase -
  J5D20_RS01600 (J5D20_01600) - 338954..339736 (-) 783 WP_209526182.1 NAD+ synthase -
  J5D20_RS01610 (J5D20_01610) ilvC 339985..340977 (+) 993 WP_209526183.1 ketol-acid reductoisomerase -
  J5D20_RS01615 (J5D20_01615) minD 341001..341807 (+) 807 WP_209526185.1 septum site-determining protein MinD -
  J5D20_RS01620 (J5D20_01620) minE 341804..342037 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  J5D20_RS01625 (J5D20_01625) dprA 342044..342844 (+) 801 WP_209526187.1 DNA-processing protein DprA Machinery gene
  J5D20_RS01630 (J5D20_01630) dprB 342841..343245 (+) 405 WP_209526188.1 Holliday junction resolvase RuvX Machinery gene
  J5D20_RS01635 (J5D20_01635) - 343521..344084 (+) 564 WP_209526600.1 tetratricopeptide repeat protein -
  J5D20_RS01640 (J5D20_01640) - 344199..344537 (+) 339 WP_000699891.1 hypothetical protein -
  J5D20_RS01645 (J5D20_01645) - 344521..345081 (+) 561 WP_209526189.1 hypothetical protein -
  J5D20_RS01650 (J5D20_01650) - 345157..346038 (-) 882 WP_209526190.1 RluA family pseudouridine synthase -
  J5D20_RS01655 (J5D20_01655) recJ 346038..347588 (-) 1551 WP_209526191.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15077.51 Da        Isoelectric Point: 9.1130

>NTDB_id=549694 J5D20_RS01630 WP_209526188.1 342841..343245(+) (dprB) [Helicobacter pylori strain MT5114]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLGYLGKKNKKLATKDGRLDSLSACRILERYCQQVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549694 J5D20_RS01630 WP_209526188.1 342841..343245(+) (dprB) [Helicobacter pylori strain MT5114]
ATGATTTTAGCGTGCGATGTGGGGTTAAAACGCATTGGAATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAGAACGTTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGTATAGAAGCTTATGAAAATTTAGGGTATTTGGGTAAGAAAAACAAGAAGCT
CGCCACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTCGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

92.424

98.507

0.91