Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   LSG40_RS10610 Genome accession   NZ_CP089236
Coordinates   2172707..2173036 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain JNQH-PA027     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2167707..2178036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG40_RS10595 (LSG40_10595) - 2169281..2171062 (+) 1782 Protein_2108 polysaccharide biosynthesis protein -
  LSG40_RS10605 (LSG40_10605) - 2172298..2172516 (+) 219 Protein_2110 polysaccharide biosynthesis protein -
  LSG40_RS10610 (LSG40_10610) comEA/comE1 2172707..2173036 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  LSG40_RS10620 (LSG40_10620) - 2173253..2174449 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  LSG40_RS10625 (LSG40_10625) uvrB 2174637..2176649 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=549679 LSG40_RS10610 WP_003104586.1 2172707..2173036(+) (comEA/comE1) [Pseudomonas aeruginosa strain JNQH-PA027]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=549679 LSG40_RS10610 WP_003104586.1 2172707..2173036(+) (comEA/comE1) [Pseudomonas aeruginosa strain JNQH-PA027]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385