Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D21_RS06495 Genome accession   NZ_CP071982
Coordinates   1368598..1369911 (-) Length   437 a.a.
NCBI ID   WP_209611625.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363598..1374911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS06465 (J5D21_06465) nadC 1364061..1364882 (-) 822 WP_187866776.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D21_RS06470 (J5D21_06470) nadA 1364882..1365892 (-) 1011 WP_209611621.1 quinolinate synthase NadA -
  J5D21_RS06475 (J5D21_06475) - 1365879..1366685 (-) 807 WP_209553766.1 phosphatidylserine decarboxylase -
  J5D21_RS06480 (J5D21_06480) - 1366679..1367185 (-) 507 WP_000953114.1 DUF6115 domain-containing protein -
  J5D21_RS06485 (J5D21_06485) - 1367198..1367692 (-) 495 WP_209611623.1 hypothetical protein -
  J5D21_RS06490 (J5D21_06490) mqnP 1367685..1368527 (-) 843 WP_229017398.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D21_RS06495 (J5D21_06495) comEC/comE3 1368598..1369911 (-) 1314 WP_209611625.1 ComEC/Rec2 family competence protein Machinery gene
  J5D21_RS06500 (J5D21_06500) - 1369908..1371374 (-) 1467 WP_209611627.1 replicative DNA helicase -
  J5D21_RS06505 (J5D21_06505) - 1371385..1372779 (-) 1395 WP_209611629.1 NAD(P)H-hydrate dehydratase -
  J5D21_RS06510 (J5D21_06510) crdS 1372782..1373984 (-) 1203 WP_209612511.1 sensor histidine kinase -
  J5D21_RS06515 (J5D21_06515) crdR 1373950..1374591 (-) 642 WP_001169746.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50405.33 Da        Isoelectric Point: 9.9008

>NTDB_id=549679 J5D21_RS06495 WP_209611625.1 1368598..1369911(-) (comEC/comE3) [Helicobacter pylori strain MT5135]
MKDKTFQGAFELLSTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLSAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHWRHFIDSVHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549679 J5D21_RS06495 WP_209611625.1 1368598..1369911(-) (comEC/comE3) [Helicobacter pylori strain MT5135]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGTTTGAGCG
CTCAAATCTTGTTGCAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGTTCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTGGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATTGCTTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCACTCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947