Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LSG40_RS02260 Genome accession   NZ_CP089236
Coordinates   469732..471075 (+) Length   447 a.a.
NCBI ID   WP_028681150.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JNQH-PA027     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464732..476075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSG40_RS02240 (LSG40_02240) - 465569..466135 (-) 567 WP_003117889.1 hypothetical protein -
  LSG40_RS02245 (LSG40_02245) rsmD 466138..466734 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LSG40_RS02250 (LSG40_02250) - 466734..468221 (-) 1488 WP_003102862.1 M16 family metallopeptidase -
  LSG40_RS02255 (LSG40_02255) - 468214..469611 (-) 1398 WP_003084498.1 M16 family metallopeptidase -
  LSG40_RS02260 (LSG40_02260) pilA 469732..471075 (+) 1344 WP_028681150.1 signal recognition particle-docking protein FtsY Machinery gene
  LSG40_RS02265 (LSG40_02265) ftsE 471072..471743 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  LSG40_RS02270 (LSG40_02270) ftsX 471743..472750 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  LSG40_RS02275 (LSG40_02275) rpoH 472864..473718 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  LSG40_RS02280 (LSG40_02280) - 473783..474388 (+) 606 WP_003084511.1 hypothetical protein -
  LSG40_RS02285 (LSG40_02285) mtgA 474393..475124 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LSG40_RS02290 (LSG40_02290) - 475161..475538 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  LSG40_RS02295 (LSG40_02295) thiS 475641..475841 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 47574.95 Da        Isoelectric Point: 4.6083

>NTDB_id=549658 LSG40_RS02260 WP_028681150.1 469732..471075(+) (pilA) [Pseudomonas aeruginosa strain JNQH-PA027]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAPVAEA
PLASDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGM
ASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVARE
PYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAK
ARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTA
KGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=549658 LSG40_RS02260 WP_028681150.1 469732..471075(+) (pilA) [Pseudomonas aeruginosa strain JNQH-PA027]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCGCCGGTTGCCGAAGCA
CCGCTCGCCAGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCAACCCGAGCCTAT
CCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCTCTGGCCGCCGCTCCGGCAGTCAGCG
AGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATCGGCGAAGGCATG
GCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGCCGACGT
CGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCGACAGCGGCGCGC
TGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCGCGCGAG
CCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCTGCAACT
CGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGGGCGAGC
GCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCCGCCAAG
GCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCTGAAGAA
GGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCGGGCAGA
ACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGCACCGCC
AAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGATCGACGA
TCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(157-222)

SRP54-type protein, GTPase domain (SRP54)

(242-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.454

96.644

0.459