Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D24_RS06790 Genome accession   NZ_CP071978
Coordinates   1434329..1435642 (-) Length   437 a.a.
NCBI ID   WP_209507811.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429329..1440642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS06760 (J5D24_06760) nadC 1429792..1430613 (-) 822 WP_097707487.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D24_RS06765 (J5D24_06765) nadA 1430613..1431623 (-) 1011 WP_097707490.1 quinolinate synthase NadA -
  J5D24_RS06770 (J5D24_06770) - 1431613..1432416 (-) 804 WP_097707492.1 phosphatidylserine decarboxylase -
  J5D24_RS06775 (J5D24_06775) - 1432410..1432916 (-) 507 WP_000953114.1 hypothetical protein -
  J5D24_RS06780 (J5D24_06780) - 1432929..1433423 (-) 495 WP_001895411.1 hypothetical protein -
  J5D24_RS06785 (J5D24_06785) mqnP 1433416..1434258 (-) 843 WP_241208263.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D24_RS06790 (J5D24_06790) comEC/comE3 1434329..1435642 (-) 1314 WP_209507811.1 ComEC/Rec2 family competence protein Machinery gene
  J5D24_RS06795 (J5D24_06795) - 1435639..1437105 (-) 1467 WP_097707498.1 replicative DNA helicase -
  J5D24_RS06800 (J5D24_06800) - 1437116..1438510 (-) 1395 WP_097707502.1 NAD(P)H-hydrate dehydratase -
  J5D24_RS06805 (J5D24_06805) crdS 1438513..1439715 (-) 1203 WP_097707505.1 copper-sensing histidine kinase CrdS -
  J5D24_RS06810 (J5D24_06810) crdR 1439681..1440322 (-) 642 WP_097708016.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50260.23 Da        Isoelectric Point: 9.8080

>NTDB_id=549637 J5D24_RS06790 WP_209507811.1 1434329..1435642(-) (comEC/comE3) [Helicobacter pylori strain MT5125]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLMRKQDFKSHLRHFIDSAHENALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLSLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIILS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549637 J5D24_RS06790 WP_209507811.1 1434329..1435642(-) (comEC/comE3) [Helicobacter pylori strain MT5125]
TTGAAAGATAAAACCTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTGATGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGATAGTGCTCATGAAAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAGGATTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCATGAGCGTGTATTTCCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATCGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTACTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCATTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATAATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCGGTTCCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTAAGCGCTCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947