Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   J5D24_RS05005 Genome accession   NZ_CP071978
Coordinates   1080219..1080482 (-) Length   87 a.a.
NCBI ID   WP_001177718.1    Uniprot ID   A0AAV3IH30
Organism   Helicobacter pylori strain MT5125     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075219..1085482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS04990 (J5D24_04990) - 1076129..1077265 (-) 1137 WP_089086746.1 VirB8/TrbF family protein -
  J5D24_RS08160 - 1077258..1077398 (-) 141 WP_000789929.1 hypothetical protein -
  J5D24_RS04995 (J5D24_04995) - 1077395..1079971 (-) 2577 WP_097707811.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  J5D24_RS05000 (J5D24_05000) - 1079971..1080207 (-) 237 WP_001168537.1 hypothetical protein -
  J5D24_RS05005 (J5D24_05005) comB3 1080219..1080482 (-) 264 WP_001177718.1 hypothetical protein Machinery gene
  J5D24_RS05010 (J5D24_05010) comB2 1080494..1080778 (-) 285 WP_000413637.1 TrbC/VirB2 family protein Machinery gene
  J5D24_RS05015 (J5D24_05015) - 1080766..1081254 (-) 489 WP_097707814.1 hypothetical protein -
  J5D24_RS05020 (J5D24_05020) - 1081318..1081476 (-) 159 WP_001875779.1 hypothetical protein -
  J5D24_RS05025 (J5D24_05025) - 1081479..1082267 (-) 789 WP_143430771.1 integrase -
  J5D24_RS05030 (J5D24_05030) - 1082343..1083420 (+) 1078 Protein_997 P-type conjugative transfer protein TrbL -
  J5D24_RS05035 (J5D24_05035) - 1083491..1084174 (+) 684 WP_209507686.1 CAAX protease -
  J5D24_RS05040 (J5D24_05040) - 1084255..1085327 (-) 1073 Protein_999 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9988.86 Da        Isoelectric Point: 5.7206

>NTDB_id=549634 J5D24_RS05005 WP_001177718.1 1080219..1080482(-) (comB3) [Helicobacter pylori strain MT5125]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=549634 J5D24_RS05005 WP_001177718.1 1080219..1080482(-) (comB3) [Helicobacter pylori strain MT5125]
ATGCAATTAGTTGGTATTTCAGTTTCTAACCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

60.92

100

0.609