Detailed information NTG0549633

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J5D24_RS04980
• Genome accession: NZ_CP071978
• Coordinates: 1073272..1074480 (-)
• Length: 402 a.a.
• NCBI ID: WP_097707806.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5125
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1068272..1079480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5D24_RS04955 (J5D24_04955)	-	1068323..1068841 (-)	519	WP_097707796.1	replication regulatory RepB family protein	-
J5D24_RS04960 (J5D24_04960)	-	1068838..1069782 (-)	945	WP_097707800.1	CpaF/VirB11 family protein	-
J5D24_RS04965 (J5D24_04965)	-	1069787..1070062 (-)	276	WP_000883375.1	hypothetical protein	-
J5D24_RS04970 (J5D24_04970)	-	1070079..1071041 (-)	963	WP_001095486.1	hypothetical protein	-
J5D24_RS04975 (J5D24_04975)	-	1071054..1073288 (-)	2235	WP_097707803.1	RGS domain-containing GTPase-activating protein	-
J5D24_RS04980 (J5D24_04980)	comB10	1073272..1074480 (-)	1209	WP_097707806.1	DNA type IV secretion system protein ComB10	Machinery gene
J5D24_RS04985 (J5D24_04985)	-	1074477..1076132 (-)	1656	WP_097707809.1	TrbG/VirB9 family P-type conjugative transfer protein	-
J5D24_RS04990 (J5D24_04990)	-	1076129..1077265 (-)	1137	WP_089086746.1	VirB8/TrbF family protein	-
J5D24_RS08160	-	1077258..1077398 (-)	141	WP_000789929.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 45018.66 Da
• Isoelectric Point: 10.0507

>NTDB_id=549633 J5D24_RS04980 WP_097707806.1 1073272..1074480(-) (comB10) [Helicobacter pylori strain MT5125]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPEMEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=549633 J5D24_RS04980 WP_097707806.1 1073272..1074480(-) (comB10) [Helicobacter pylori strain MT5125]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGATGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAAGG
CTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGGCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.538	98.01	0.515