Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J5D24_RS00090 Genome accession   NZ_CP071978
Coordinates   14105..14386 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain MT5125     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 9105..19386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS00070 (J5D24_00070) groES 9672..10028 (-) 357 WP_000671922.1 co-chaperone GroES -
  J5D24_RS00075 (J5D24_00075) dnaG 10314..11993 (+) 1680 WP_209507909.1 DNA primase -
  J5D24_RS00080 (J5D24_00080) - 11990..13042 (+) 1053 WP_097708224.1 MnmA/TRMU family protein -
  J5D24_RS00085 (J5D24_00085) - 13132..13959 (+) 828 WP_097708223.1 DUF5718 family protein -
  J5D24_RS00090 (J5D24_00090) comB2 14105..14386 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  J5D24_RS00095 (J5D24_00095) comB3 14386..14649 (+) 264 WP_000584948.1 hypothetical protein Machinery gene
  J5D24_RS00100 (J5D24_00100) comB4 14651..17014 (+) 2364 WP_097708222.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  J5D24_RS00110 (J5D24_00110) - 17319..18659 (+) 1341 WP_198994763.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=549619 J5D24_RS00090 WP_001272686.1 14105..14386(+) (comB2) [Helicobacter pylori strain MT5125]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=549619 J5D24_RS00090 WP_001272686.1 14105..14386(+) (comB2) [Helicobacter pylori strain MT5125]
ATGTCCGCTCATTTTTTGAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCTATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATCTTATTCACGATCCTTGGCGTGGTGTTTGGGATCTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989