Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J5D22_RS06695 Genome accession   NZ_CP071977
Coordinates   1414979..1416292 (-) Length   437 a.a.
NCBI ID   WP_209505685.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5105     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409979..1421292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D22_RS06665 (J5D22_06665) nadC 1410442..1411263 (-) 822 WP_097722757.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J5D22_RS06670 (J5D22_06670) nadA 1411263..1412273 (-) 1011 WP_021187309.1 quinolinate synthase NadA -
  J5D22_RS06675 (J5D22_06675) - 1412260..1413066 (-) 807 WP_021187308.1 phosphatidylserine decarboxylase -
  J5D22_RS06680 (J5D22_06680) - 1413060..1413566 (-) 507 WP_000953090.1 hypothetical protein -
  J5D22_RS06685 (J5D22_06685) - 1413579..1414073 (-) 495 WP_021187307.1 hypothetical protein -
  J5D22_RS06690 (J5D22_06690) mqnP 1414066..1414908 (-) 843 WP_229256262.1 menaquinone biosynthesis prenyltransferase MqnP -
  J5D22_RS06695 (J5D22_06695) comEC/comE3 1414979..1416292 (-) 1314 WP_209505685.1 ComEC/Rec2 family competence protein Machinery gene
  J5D22_RS06700 (J5D22_06700) - 1416289..1417749 (-) 1461 WP_209505687.1 replicative DNA helicase -
  J5D22_RS06705 (J5D22_06705) - 1417760..1419154 (-) 1395 WP_209505688.1 NAD(P)H-hydrate dehydratase -
  J5D22_RS06710 (J5D22_06710) crdS 1419157..1420359 (-) 1203 WP_209506595.1 HAMP domain-containing sensor histidine kinase -
  J5D22_RS06715 (J5D22_06715) crdR 1420325..1420966 (-) 642 WP_209505690.1 response regulator transcription factor -
  J5D22_RS08105 - 1421053..1421127 (-) 75 Protein_1329 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50265.10 Da        Isoelectric Point: 9.8459

>NTDB_id=549615 J5D22_RS06695 WP_209505685.1 1414979..1416292(-) (comEC/comE3) [Helicobacter pylori strain MT5105]
MKDKTFQGAFDLLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549615 J5D22_RS06695 WP_209505685.1 1414979..1416292(-) (comEC/comE3) [Helicobacter pylori strain MT5105]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGATTTGCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCACCCATTCCAACGCTTTGGTGGGCAATTTGTATCGAGCGCTCTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCACTCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938