Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   J4T92_RS06475 Genome accession   NZ_CP071975
Coordinates   1354256..1355569 (-) Length   437 a.a.
NCBI ID   WP_209552842.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5118     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349256..1360569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T92_RS06445 (J4T92_06445) nadC 1349719..1350540 (-) 822 WP_209552839.1 carboxylating nicotinate-nucleotide diphosphorylase -
  J4T92_RS06450 (J4T92_06450) nadA 1350540..1351550 (-) 1011 WP_209552840.1 quinolinate synthase NadA -
  J4T92_RS06455 (J4T92_06455) - 1351540..1352343 (-) 804 WP_209552841.1 phosphatidylserine decarboxylase -
  J4T92_RS06460 (J4T92_06460) - 1352337..1352843 (-) 507 WP_000953090.1 hypothetical protein -
  J4T92_RS06465 (J4T92_06465) - 1352856..1353350 (-) 495 WP_187931113.1 hypothetical protein -
  J4T92_RS06470 (J4T92_06470) mqnP 1353343..1354185 (-) 843 WP_229017398.1 menaquinone biosynthesis prenyltransferase MqnP -
  J4T92_RS06475 (J4T92_06475) comEC/comE3 1354256..1355569 (-) 1314 WP_209552842.1 ComEC/Rec2 family competence protein Machinery gene
  J4T92_RS06480 (J4T92_06480) - 1355566..1357026 (-) 1461 WP_209552843.1 replicative DNA helicase -
  J4T92_RS06485 (J4T92_06485) - 1357037..1358431 (-) 1395 WP_209552844.1 NAD(P)H-hydrate dehydratase -
  J4T92_RS06490 (J4T92_06490) crdS 1358434..1359636 (-) 1203 WP_209553462.1 HAMP domain-containing sensor histidine kinase -
  J4T92_RS06495 (J4T92_06495) crdR 1359602..1360243 (-) 642 WP_209552845.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50295.19 Da        Isoelectric Point: 9.8459

>NTDB_id=549594 J4T92_RS06475 WP_209552842.1 1354256..1355569(-) (comEC/comE3) [Helicobacter pylori strain MT5118]
MKDKTFQGAFDLLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLMRKQDFKSHLRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHFLSMPLTIPTISVSSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=549594 J4T92_RS06475 WP_209552842.1 1354256..1355569(-) (comEC/comE3) [Helicobacter pylori strain MT5118]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGATTTGCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACGAGCCTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAATGCGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCACCCATTCCAACGCTTTGGTGGGCAATTTGTATCGAGCGCTCTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTGGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCCTAAGTTTTAAGCTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATTGCTTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCCACGATTTCGGTTTCTTCACCCTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCACTCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936