Detailed information NTG0549592

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: J4T92_RS04835
• Genome accession: NZ_CP071975
• Coordinates: 1032469..1033674 (-)
• Length: 401 a.a.
• NCBI ID: WP_209552654.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain MT5118
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1027469..1038674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T92_RS04805 (J4T92_04805)	-	1027855..1028454 (-)	600	WP_000287216.1	IS607 family transposase	-
J4T92_RS04810 (J4T92_04810)	-	1028536..1028832 (-)	297	Protein_949	DNA topoisomerase	-
J4T92_RS04815 (J4T92_04815)	-	1028828..1028962 (-)	135	Protein_950	conjugal transfer protein TrbB	-
J4T92_RS04820 (J4T92_04820)	-	1028967..1029242 (-)	276	WP_078242016.1	hypothetical protein	-
J4T92_RS04825 (J4T92_04825)	-	1029259..1030232 (-)	974	Protein_952	hypothetical protein	-
J4T92_RS04830 (J4T92_04830)	-	1030245..1032485 (-)	2241	WP_209552652.1	collagen-like protein	-
J4T92_RS04835 (J4T92_04835)	comB10	1032469..1033674 (-)	1206	WP_209552654.1	DNA type IV secretion system protein ComB10	Machinery gene
J4T92_RS04840 (J4T92_04840)	-	1033671..1035317 (-)	1647	WP_209552656.1	TrbG/VirB9 family P-type conjugative transfer protein	-
J4T92_RS04845 (J4T92_04845)	-	1035314..1036480 (-)	1167	WP_209552657.1	VirB8/TrbF family protein	-
J4T92_RS07880	-	1036473..1036607 (-)	135	WP_249936631.1	type IV secretion system protein VirB7	-
J4T92_RS04850 (J4T92_04850)	-	1036604..1037647 (-)	1044	Protein_958	cell division protein FtsK	-

Sequence

Protein

• Length: 401 a.a.
• Molecular weight: 44897.51 Da
• Isoelectric Point: 10.1157

>NTDB_id=549592 J4T92_RS04835 WP_209552654.1 1032469..1033674(-) (comB10) [Helicobacter pylori strain MT5118]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKKAKETPEVTTQEPTTQTSP
NPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPPKIKPKPKHTREQLEFLNTRLKPLEPTKPATKPETEYGVDSFT
NLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLN
IAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDY
LLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEE
I

Nucleotide

• Length: 1206 bp

>NTDB_id=549592 J4T92_RS04835 WP_209552654.1 1032469..1033674(-) (comB10) [Helicobacter pylori strain MT5118]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGCCCC
AATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATACTAT
CACGCATTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAGGGAACAATTAGAGTTTT
TAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGTGTGGATAGTTTTACT
AATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTT
TTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTA
GAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAAC
ATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTAACTAACGCAAGAGGGGCTGATGTGAAGGGTTA
TAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATG
GTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTAC
TTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCA
AAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAG
ATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAA
ATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (177-367)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.926	98.005	0.519