Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | J4T92_RS04745 | Genome accession | NZ_CP071975 |
| Coordinates | 1019683..1019946 (+) | Length | 87 a.a. |
| NCBI ID | WP_001177718.1 | Uniprot ID | A0AAV3IH30 |
| Organism | Helicobacter pylori strain MT5118 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1014683..1024946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J4T92_RS04715 (J4T92_04715) | - | 1014903..1016747 (+) | 1845 | WP_209552642.1 | hypothetical protein | - |
| J4T92_RS04720 (J4T92_04720) | - | 1016881..1017790 (+) | 910 | Protein_931 | hypothetical protein | - |
| J4T92_RS04725 (J4T92_04725) | - | 1017898..1018686 (+) | 789 | WP_209552644.1 | integrase | - |
| J4T92_RS04730 (J4T92_04730) | - | 1018689..1018919 (+) | 231 | WP_209552645.1 | hypothetical protein | - |
| J4T92_RS04735 (J4T92_04735) | - | 1018912..1019409 (+) | 498 | WP_209552646.1 | hypothetical protein | - |
| J4T92_RS04740 (J4T92_04740) | comB2 | 1019387..1019671 (+) | 285 | WP_000736106.1 | TrbC/VirB2 family protein | Machinery gene |
| J4T92_RS04745 (J4T92_04745) | comB3 | 1019683..1019946 (+) | 264 | WP_001177718.1 | hypothetical protein | Machinery gene |
| J4T92_RS04750 (J4T92_04750) | - | 1019958..1020194 (+) | 237 | WP_001168532.1 | hypothetical protein | - |
| J4T92_RS04755 (J4T92_04755) | - | 1020194..1020735 (+) | 542 | Protein_938 | transporter | - |
| J4T92_RS04760 (J4T92_04760) | - | 1020732..1020995 (-) | 264 | Protein_939 | ArdC family protein | - |
| J4T92_RS04765 (J4T92_04765) | - | 1020996..1021160 (-) | 165 | WP_000189763.1 | hypothetical protein | - |
| J4T92_RS04770 (J4T92_04770) | - | 1021796..1022464 (+) | 669 | WP_000150803.1 | ParA family protein | - |
| J4T92_RS04775 (J4T92_04775) | - | 1022511..1022888 (+) | 378 | WP_000365702.1 | hypothetical protein | - |
| J4T92_RS04780 (J4T92_04780) | - | 1022866..1023531 (+) | 666 | WP_000855663.1 | hypothetical protein | - |
| J4T92_RS04785 (J4T92_04785) | - | 1023605..1024408 (-) | 804 | WP_209552650.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| J4T92_RS04790 (J4T92_04790) | - | 1024378..1024848 (-) | 471 | WP_000965788.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9988.86 Da Isoelectric Point: 5.7206
>NTDB_id=549591 J4T92_RS04745 WP_001177718.1 1019683..1019946(+) (comB3) [Helicobacter pylori strain MT5118]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMMPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=549591 J4T92_RS04745 WP_001177718.1 1019683..1019946(+) (comB3) [Helicobacter pylori strain MT5118]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATGCCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |