Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   J4T92_RS04740 Genome accession   NZ_CP071975
Coordinates   1019387..1019671 (+) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori strain MT5118     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1014387..1024671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T92_RS04715 (J4T92_04715) - 1014903..1016747 (+) 1845 WP_209552642.1 hypothetical protein -
  J4T92_RS04720 (J4T92_04720) - 1016881..1017790 (+) 910 Protein_931 hypothetical protein -
  J4T92_RS04725 (J4T92_04725) - 1017898..1018686 (+) 789 WP_209552644.1 integrase -
  J4T92_RS04730 (J4T92_04730) - 1018689..1018919 (+) 231 WP_209552645.1 hypothetical protein -
  J4T92_RS04735 (J4T92_04735) - 1018912..1019409 (+) 498 WP_209552646.1 hypothetical protein -
  J4T92_RS04740 (J4T92_04740) comB2 1019387..1019671 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  J4T92_RS04745 (J4T92_04745) comB3 1019683..1019946 (+) 264 WP_001177718.1 hypothetical protein Machinery gene
  J4T92_RS04750 (J4T92_04750) - 1019958..1020194 (+) 237 WP_001168532.1 hypothetical protein -
  J4T92_RS04755 (J4T92_04755) - 1020194..1020735 (+) 542 Protein_938 transporter -
  J4T92_RS04760 (J4T92_04760) - 1020732..1020995 (-) 264 Protein_939 ArdC family protein -
  J4T92_RS04765 (J4T92_04765) - 1020996..1021160 (-) 165 WP_000189763.1 hypothetical protein -
  J4T92_RS04770 (J4T92_04770) - 1021796..1022464 (+) 669 WP_000150803.1 ParA family protein -
  J4T92_RS04775 (J4T92_04775) - 1022511..1022888 (+) 378 WP_000365702.1 hypothetical protein -
  J4T92_RS04780 (J4T92_04780) - 1022866..1023531 (+) 666 WP_000855663.1 hypothetical protein -
  J4T92_RS04785 (J4T92_04785) - 1023605..1024408 (-) 804 WP_209552650.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=549590 J4T92_RS04740 WP_000736106.1 1019387..1019671(+) (comB2) [Helicobacter pylori strain MT5118]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=549590 J4T92_RS04740 WP_000736106.1 1019387..1019671(+) (comB2) [Helicobacter pylori strain MT5118]
ATGAAAAAATTAAGGCATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCTCTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATTCCATTGAACAACAGCTCACTAGCCCTACGGCTAAAGGCATTTTAATGGTTATTTTTTTAGGACTTGCTA
TTTTTATATGGAAAAACTTAGATAGATGGAAAGAAATTTTAATGACCGTGCTTGCTATTGCAATTGGTGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAACTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553