Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   J4T92_RS01625 Genome accession   NZ_CP071975
Coordinates   340421..340825 (+) Length   134 a.a.
NCBI ID   WP_209553184.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335421..345825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4T92_RS01590 (J4T92_01590) - 335593..336531 (-) 939 WP_209553180.1 tetraacyldisaccharide 4'-kinase -
  J4T92_RS01595 (J4T92_01595) - 336528..337310 (-) 783 WP_209553181.1 NAD+ synthase -
  J4T92_RS01605 (J4T92_01605) ilvC 337559..338551 (+) 993 WP_209553182.1 ketol-acid reductoisomerase -
  J4T92_RS01610 (J4T92_01610) minD 338576..339382 (+) 807 WP_001019048.1 septum site-determining protein MinD -
  J4T92_RS01615 (J4T92_01615) minE 339379..339612 (+) 234 WP_077656567.1 cell division topological specificity factor MinE -
  J4T92_RS01620 (J4T92_01620) dprA 339624..340424 (+) 801 WP_209553183.1 DNA-processing protein DprA Machinery gene
  J4T92_RS01625 (J4T92_01625) dprB 340421..340825 (+) 405 WP_209553184.1 Holliday junction resolvase RuvX Machinery gene
  J4T92_RS01630 (J4T92_01630) - 340958..341629 (+) 672 WP_209553185.1 tetratricopeptide repeat protein -
  J4T92_RS01635 (J4T92_01635) - 341744..342082 (+) 339 WP_000699879.1 hypothetical protein -
  J4T92_RS01640 (J4T92_01640) - 342066..342632 (+) 567 WP_078283313.1 hypothetical protein -
  J4T92_RS01645 (J4T92_01645) - 342663..343319 (+) 657 WP_240146607.1 lysozyme -
  J4T92_RS01650 (J4T92_01650) - 343677..343994 (+) 318 Protein_320 DUF1294 domain-containing protein -
  J4T92_RS07800 - 343994..344779 (+) 786 Protein_321 hypothetical protein -
  J4T92_RS07960 - 344769..344954 (+) 186 WP_001875306.1 hypothetical protein -
  J4T92_RS07965 (J4T92_01670) - 345169..345813 (+) 645 WP_001874143.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15243.61 Da        Isoelectric Point: 8.2908

>NTDB_id=549586 J4T92_RS01625 WP_209553184.1 340421..340825(+) (dprB) [Helicobacter pylori strain MT5118]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=549586 J4T92_RS01625 WP_209553184.1 340421..340825(+) (dprB) [Helicobacter pylori strain MT5118]
ATGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAGAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCTCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAATAAGCGACT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94