Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   J5N61_RS02645 Genome accession   NZ_CP071973
Coordinates   563642..564529 (+) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558642..569529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS02620 (J5N61_02620) - 559615..560124 (-) 510 WP_157937965.1 dihydrofolate reductase -
  J5N61_RS02625 (J5N61_02625) thyA 560145..560987 (-) 843 WP_004916477.1 thymidylate synthase -
  J5N61_RS02630 (J5N61_02630) - 561146..561721 (-) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  J5N61_RS02635 (J5N61_02635) - 561810..562526 (-) 717 WP_157938054.1 DUF3108 domain-containing protein -
  J5N61_RS02640 (J5N61_02640) - 562720..563397 (-) 678 WP_004958891.1 hypothetical protein -
  J5N61_RS02645 (J5N61_02645) tonB2 563642..564529 (+) 888 WP_004957789.1 energy transducer TonB Machinery gene
  J5N61_RS02650 (J5N61_02650) - 564782..566932 (+) 2151 WP_005403644.1 TonB-dependent siderophore receptor -
  J5N61_RS02655 (J5N61_02655) - 566997..567296 (-) 300 WP_212388062.1 antibiotic biosynthesis monooxygenase family protein -
  J5N61_RS02660 (J5N61_02660) ybeY 567308..567793 (-) 486 WP_005403646.1 rRNA maturation RNase YbeY -
  J5N61_RS02665 (J5N61_02665) - 568086..569159 (-) 1074 WP_004916462.1 PhoH family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=549544 J5N61_RS02645 WP_004957789.1 563642..564529(+) (tonB2) [Acinetobacter junii strain INC8271]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=549544 J5N61_RS02645 WP_004957789.1 563642..564529(+) (tonB2) [Acinetobacter junii strain INC8271]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCGGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACTGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCCGATCAAAAGGGTTCAGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAGGCGGATGCGACTACTGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGCGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTAAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAACGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATCTAGATAAATTCCGCCAAAAAGTTGAGCTGTACGGAAATCGCTATTACCCAGATGCTG
CTAAACAACAGAGGTTATCGGGTGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGACATTCTATTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGAGCCCCTTTTGGTGCATTTGA
TTCAACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGGACTTGGCGTTTTGATCCAGTGGATGCTGAGTTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769