Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   J5N61_RS02140 Genome accession   NZ_CP071973
Coordinates   466863..469088 (-) Length   741 a.a.
NCBI ID   WP_212388000.1    Uniprot ID   -
Organism   Acinetobacter junii strain INC8271     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461863..474088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5N61_RS02120 (J5N61_02120) - 462456..462782 (-) 327 WP_004763725.1 chaperone modulator CbpM -
  J5N61_RS02125 (J5N61_02125) - 462794..463759 (-) 966 WP_005403596.1 DnaJ C-terminal domain-containing protein -
  J5N61_RS02130 (J5N61_02130) - 464013..464888 (-) 876 WP_004958672.1 Hsp33 family molecular chaperone HslO -
  J5N61_RS02135 (J5N61_02135) - 465008..466828 (-) 1821 WP_212387998.1 cation:proton antiporter -
  J5N61_RS02140 (J5N61_02140) priA 466863..469088 (-) 2226 WP_212388000.1 primosomal protein N' Machinery gene
  J5N61_RS02145 (J5N61_02145) gspF 469289..470494 (+) 1206 WP_004957567.1 type II secretion system inner membrane protein GspF -
  J5N61_RS02150 (J5N61_02150) gspG 470518..470955 (+) 438 WP_004916750.1 type II secretion system major pseudopilin GspG -
  J5N61_RS02155 (J5N61_02155) - 471219..471563 (+) 345 WP_005403600.1 hypothetical protein -
  J5N61_RS02160 (J5N61_02160) lnt 471619..473178 (-) 1560 WP_126131676.1 apolipoprotein N-acyltransferase -
  J5N61_RS02165 (J5N61_02165) - 473175..474014 (-) 840 WP_004916742.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 83927.71 Da        Isoelectric Point: 8.4025

>NTDB_id=549543 J5N61_RS02140 WP_212388000.1 466863..469088(-) (priA) [Acinetobacter junii strain INC8271]
MPTENSNAILYRIRVALPVYVYDTFDYTVSAEQYLQAQIGARVSVSFGRQNLIGIITEKVDPNEPFTGQFKLKPITALLD
EDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPALLRQGRALDILFHHWNILAHDGPESLLKRSQKQYDAYQILKLHPHG
ATENILNLSGVETATLKALEKKGLVECQLEAHDFTPMPIQLAQMPLTPNEDQKRAIQQILKAQQRYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLHNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGTAVLPKMHV
IDLKVAKKKNGISQNLIDQIKLTLERKEQVLIFLNRRGYAPVLLCESCGWQANCPHCDAHFTVHSQPYSYLHCHHCGTIN
RLPDECPACKHQTLKSIGAGTAKVEEQLHELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDSGLLSVDPRAPERTAQLIIQVAGRAGRGEHKGNVYLQSLRPDHPMLTTLIEQDYRAVAKQMLSERKVAML
PPYRYAVLVRVESKDRDYSQQFLMEAAQGLSAIAADIIEIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=549543 J5N61_RS02140 WP_212388000.1 466863..469088(-) (priA) [Acinetobacter junii strain INC8271]
ATGCCTACCGAAAATTCTAACGCTATTCTTTACCGTATTCGAGTTGCATTACCCGTCTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCAGAGCAATACTTGCAAGCTCAAATAGGCGCACGTGTTTCTGTTTCATTTGGTCGCCAAAATCTGATCG
GTATCATTACCGAGAAAGTTGATCCAAATGAGCCGTTTACAGGGCAATTCAAACTTAAACCGATTACAGCACTTCTTGAT
GAAGATGCTATCTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCTGCGCAGTATTATCAATTCCCGATTGGTGAAGT
GATGCAAAGTGCACTTCCTGCACTCTTAAGACAGGGTCGTGCTTTAGATATCTTATTTCACCACTGGAATATTCTCGCGC
ATGACGGTCCAGAATCTTTATTAAAACGTTCTCAAAAGCAATACGATGCCTATCAGATTCTAAAACTTCATCCACATGGC
GCTACCGAAAATATTTTAAATCTTAGTGGTGTAGAAACTGCAACATTAAAGGCATTGGAAAAAAAAGGACTGGTTGAATG
TCAGCTTGAAGCACATGACTTTACACCGATGCCTATACAACTTGCACAAATGCCTTTAACGCCGAACGAAGATCAAAAGC
GAGCAATTCAACAAATACTCAAAGCTCAACAACGTTACCAAGCCTTTTTACTAGATGGACTTACAGGCAGTGGTAAAACC
GAAGTCTATTTGCAAGTAATGCATGAGGTCCTAAAGCAAGGTAAACAAGTCTTGGTGTTGGTGCCTGAAATTGGTTTGAC
ACCTCAAACGGTCGCACGCTTCAAATCTCGTTTTCATTGCGATGTTGCTTTACTACACTCGGGACTTAATGATTCAAAAC
GTTTGCAAGCTTGGCAACATGCACAAACTGGTAAAGCCTCTATCATCATTGGAACGCGCTCTGCGATTTACACCCCTTTG
CCGCATCTAGGTTTGATCATCTTAGATGAAGAACACGATCTCTCTTATAAACAACAAGAGGGTTTCCGTTATCACACTCG
TGATGTCGCCCTATATCGTGGTCATTTACACAATTGTCCCGTGATTTTGGGTTCAGCCACACCAAGTATTGATAGTTATC
ATCTAGTGGAGTCTGGTAAATTGCATTTACTTGAACTCAATCAACGTGCTGGAACTGCGGTCTTACCGAAAATGCATGTG
ATTGATCTAAAAGTAGCAAAGAAGAAAAATGGCATCAGTCAAAACCTAATTGATCAAATTAAATTAACTTTAGAGCGCAA
AGAACAGGTTCTTATCTTCCTAAACCGTCGAGGTTACGCTCCTGTTTTACTATGTGAAAGTTGTGGGTGGCAAGCAAATT
GCCCACATTGTGATGCACATTTCACTGTACATTCACAGCCTTATTCTTATTTACACTGTCATCATTGCGGTACGATCAAT
CGCCTGCCAGACGAATGCCCTGCTTGTAAACATCAAACGTTAAAAAGCATTGGTGCTGGAACTGCAAAAGTTGAAGAACA
GTTACACGAGTTATTCCCCCATCATGAAGTGATTCGGGTAGATCGTGACAGTACAAGTCGTGTGGGTAGTTGGCAAAAAA
TCTATGATCGAATTCAACAGAATAAACCAAGCATTTTGTTAGGCACTCAAATGCTGGCGAAGGGACATCATTTCCCACAC
GTCACATTAGTCGCTATTCTGGATATCGACTCAGGGTTATTAAGCGTAGACCCTAGAGCACCTGAGCGCACAGCACAATT
GATCATACAAGTTGCAGGACGTGCAGGACGTGGTGAACATAAAGGCAACGTGTATTTACAAAGTTTAAGACCCGATCATC
CAATGCTCACAACCTTGATTGAACAAGACTATCGTGCCGTTGCAAAACAGATGCTGAGTGAACGTAAAGTTGCGATGTTA
CCGCCTTATCGTTACGCTGTTTTAGTCCGTGTGGAGTCGAAAGATCGTGATTATAGTCAACAGTTTTTAATGGAAGCAGC
ACAAGGCTTAAGCGCTATTGCAGCAGATATTATTGAAATTTGGGGACCTATTCCTGCCCCAATGGAACGCAAAGCAGGGC
GTTATCGAGCGCATATGGTGATTTTATCTGCCGACCGAGCAAAACTGCATTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCTCGCCAACATCAACTCAGATTATCAATTGATGTTGATCCACAAGAGTTTAGTTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.326

99.73

0.811