Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   J4048_RS18660 Genome accession   NZ_CP071970
Coordinates   3813735..3814880 (+) Length   381 a.a.
NCBI ID   WP_015418439.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3808735..3819880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS18640 (J4048_18640) - 3809632..3810060 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  J4048_RS18645 (J4048_18645) - 3810214..3810726 (+) 513 Protein_3646 bacteriocin biosynthesis protein AlbG -
  J4048_RS18650 (J4048_18650) - 3810733..3812109 (-) 1377 WP_061860962.1 YncE family protein -
  J4048_RS18655 (J4048_18655) - 3812149..3813504 (-) 1356 WP_077392085.1 YncE family protein -
  J4048_RS18660 (J4048_18660) rapF 3813735..3814880 (+) 1146 WP_015418439.1 tetratricopeptide repeat protein Regulator
  J4048_RS18665 (J4048_18665) phrF 3814864..3814983 (+) 120 WP_031378557.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  J4048_RS18670 (J4048_18670) - 3815181..3815384 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  J4048_RS18675 (J4048_18675) - 3815398..3815601 (+) 204 WP_007407641.1 hypothetical protein -
  J4048_RS18680 (J4048_18680) - 3815636..3815821 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  J4048_RS18685 (J4048_18685) - 3816007..3816288 (+) 282 WP_007407643.1 hypothetical protein -
  J4048_RS18690 (J4048_18690) - 3816332..3816844 (+) 513 WP_031304384.1 stage II sporulation protein M -
  J4048_RS18695 (J4048_18695) - 3817435..3817653 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  J4048_RS18700 (J4048_18700) speB 3817821..3818693 (-) 873 WP_040238749.1 agmatinase -
  J4048_RS18705 (J4048_18705) speE 3818752..3819582 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45569.65 Da        Isoelectric Point: 4.5769

>NTDB_id=549526 J4048_RS18660 WP_015418439.1 3813735..3814880(+) (rapF) [Bacillus amyloliquefaciens strain XJ5]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=549526 J4048_RS18660 WP_015418439.1 3813735..3814880(+) (rapF) [Bacillus amyloliquefaciens strain XJ5]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTAATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTATTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564