Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J4048_RS15675 Genome accession   NZ_CP071970
Coordinates   3194628..3195272 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3189628..3200272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS15640 (J4048_15640) - 3190813..3191244 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  J4048_RS15645 (J4048_15645) - 3191244..3191585 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  J4048_RS15650 (J4048_15650) - 3191578..3193059 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  J4048_RS15655 (J4048_15655) - 3193065..3193541 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  J4048_RS15660 (J4048_15660) - 3193541..3193825 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  J4048_RS15665 (J4048_15665) mnhG 3193809..3194183 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  J4048_RS15670 (J4048_15670) - 3194223..3194606 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  J4048_RS15675 (J4048_15675) comA 3194628..3195272 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  J4048_RS15680 (J4048_15680) comP 3195353..3197659 (-) 2307 WP_208557092.1 histidine kinase Regulator
  J4048_RS15685 (J4048_15685) comX 3197682..3197852 (-) 171 WP_015418105.1 competence pheromone ComX -
  J4048_RS15690 (J4048_15690) - 3197849..3198778 (-) 930 WP_224462816.1 polyprenyl synthetase family protein -
  J4048_RS15695 (J4048_15695) degQ 3198909..3199049 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  J4048_RS15700 (J4048_15700) - 3199512..3199853 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=549514 J4048_RS15675 WP_003152052.1 3194628..3195272(-) (comA) [Bacillus amyloliquefaciens strain XJ5]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=549514 J4048_RS15675 WP_003152052.1 3194628..3195272(-) (comA) [Bacillus amyloliquefaciens strain XJ5]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACTCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864