Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   J4048_RS13880 Genome accession   NZ_CP071970
Coordinates   2842263..2843015 (-) Length   250 a.a.
NCBI ID   WP_208557089.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2837263..2848015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS13855 (J4048_13855) mreC 2837699..2838562 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  J4048_RS13860 (J4048_13860) mreB 2838593..2839606 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  J4048_RS13865 (J4048_13865) radC 2839698..2840393 (-) 696 WP_007408165.1 DNA repair protein RadC -
  J4048_RS13870 (J4048_13870) - 2840425..2840994 (-) 570 WP_015417926.1 Maf family protein -
  J4048_RS13875 (J4048_13875) - 2841135..2842136 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  J4048_RS13880 (J4048_13880) comC 2842263..2843015 (-) 753 WP_208557089.1 A24 family peptidase Machinery gene
  J4048_RS13885 (J4048_13885) - 2843155..2844447 (-) 1293 WP_064115685.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  J4048_RS13890 (J4048_13890) - 2844506..2847148 (-) 2643 WP_064115684.1 valine--tRNA ligase -
  J4048_RS13895 (J4048_13895) - 2847601..2847792 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27278.02 Da        Isoelectric Point: 9.2521

>NTDB_id=549509 J4048_RS13880 WP_208557089.1 2842263..2843015(-) (comC) [Bacillus amyloliquefaciens strain XJ5]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAAWGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=549509 J4048_RS13880 WP_208557089.1 2842263..2843015(-) (comC) [Bacillus amyloliquefaciens strain XJ5]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCTGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58