Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   J4048_RS05320 Genome accession   NZ_CP071970
Coordinates   1062500..1063078 (+) Length   192 a.a.
NCBI ID   WP_040238322.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain XJ5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1057500..1068078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4048_RS05300 (J4048_05300) - 1058001..1059293 (-) 1293 WP_208557125.1 globin-coupled sensor protein -
  J4048_RS05305 (J4048_05305) - 1059415..1060938 (-) 1524 WP_015417167.1 FAD-dependent oxidoreductase -
  J4048_RS05310 (J4048_05310) - 1061063..1061920 (+) 858 WP_040238324.1 SDR family oxidoreductase -
  J4048_RS05315 (J4048_05315) - 1061951..1062184 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  J4048_RS05320 (J4048_05320) comK 1062500..1063078 (+) 579 WP_040238322.1 competence protein ComK Regulator
  J4048_RS05325 (J4048_05325) - 1063223..1063591 (+) 369 WP_012117235.1 iron chaperone -
  J4048_RS05330 (J4048_05330) - 1063618..1063989 (+) 372 WP_040238319.1 iron chaperone -
  J4048_RS05335 (J4048_05335) - 1064112..1064621 (+) 510 WP_015417169.1 mep operon protein MepB -
  J4048_RS05340 (J4048_05340) - 1064850..1065560 (-) 711 WP_033574494.1 YrpD family protein -
  J4048_RS05345 (J4048_05345) - 1065756..1066025 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  J4048_RS05350 (J4048_05350) - 1066058..1066375 (-) 318 WP_003155166.1 YbjQ family protein -
  J4048_RS05355 (J4048_05355) - 1066417..1067886 (-) 1470 WP_040238317.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22327.63 Da        Isoelectric Point: 8.1419

>NTDB_id=549474 J4048_RS05320 WP_040238322.1 1062500..1063078(+) (comK) [Bacillus amyloliquefaciens strain XJ5]
MCQKIHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=549474 J4048_RS05320 WP_040238322.1 1062500..1063078(+) (comK) [Bacillus amyloliquefaciens strain XJ5]
ATGTGCCAGAAAATACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818