Detailed information NTG0549417

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: J5J84_RS14835
• Genome accession: NZ_CP071957
• Coordinates: 3198208..3199266 (-)
• Length: 352 a.a.
• NCBI ID: WP_353848242.1
• Uniprot ID: -
• Organism: Alcaligenes faecalis strain JLAF9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3193208..3204266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5J84_RS14810 (J5J84_14810)	nusB	3193306..3193791 (-)	486	WP_009454782.1	transcription antitermination factor NusB	-
J5J84_RS14815 (J5J84_14815)	ribH	3193775..3194293 (-)	519	WP_042488798.1	6,7-dimethyl-8-ribityllumazine synthase	-
J5J84_RS14820 (J5J84_14820)	ribBA	3194308..3195474 (-)	1167	WP_042488800.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
J5J84_RS14825 (J5J84_14825)	-	3195590..3196417 (+)	828	WP_045931249.1	IclR family transcriptional regulator	-
J5J84_RS14830 (J5J84_14830)	-	3196537..3198066 (+)	1530	WP_086069599.1	CYTH and CHAD domain-containing protein	-
J5J84_RS14835 (J5J84_14835)	pilA	3198208..3199266 (-)	1059	WP_353848242.1	signal recognition particle-docking protein FtsY	Machinery gene
J5J84_RS14840 (J5J84_14840)	rsmD	3199766..3200395 (+)	630	WP_197313542.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
J5J84_RS14845 (J5J84_14845)	coaD	3200416..3200922 (+)	507	WP_045931252.1	pantetheine-phosphate adenylyltransferase	-
J5J84_RS14850 (J5J84_14850)	-	3201008..3201265 (+)	258	WP_009454772.1	YfhL family 4Fe-4S dicluster ferredoxin	-
J5J84_RS14855 (J5J84_14855)	-	3201336..3201728 (-)	393	WP_252605438.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37003.62 Da
• Isoelectric Point: 5.1158

>NTDB_id=549417 J5J84_RS14835 WP_353848242.1 3198208..3199266(-) (pilA) [Alcaligenes faecalis strain JLAF9]
MPQPEPEVPPTPEPEPQPEIVPVPAPAPAPQPEPAPAPEPEAAAPVVKTSWMSRLKQGLSRTGQSLSSLFVGAKVDETLF
EELEDALLMADAGVEATEKLITALRARVRKEKVSDAAQVKQILCDILTDHLKPLEKSFPLESSKPLVVMIAGVNGAGKTT
SIGKLAHTFQEQGAKVLLAAGDTFRAAAREQLIEWGTRNNVSVIAQDGGDPAAVAFDAVHAGRARDMGVVMVDTAGRLPT
QLHLMEELKKIKRVIGKADGQAPHEILLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVAACAQGVRP
IPVYWIGVGEGMQDLQAFVAREFASALLGMNA

Nucleotide

• Length: 1059 bp

>NTDB_id=549417 J5J84_RS14835 WP_353848242.1 3198208..3199266(-) (pilA) [Alcaligenes faecalis strain JLAF9]
GTGCCGCAGCCAGAACCTGAGGTGCCGCCGACTCCTGAACCGGAGCCACAGCCAGAGATTGTTCCCGTTCCTGCACCAGC
CCCCGCGCCCCAGCCTGAGCCAGCTCCGGCCCCAGAGCCAGAAGCCGCCGCCCCTGTGGTGAAAACCTCCTGGATGTCCC
GCCTGAAACAGGGCTTGTCGCGTACAGGACAGAGCCTGAGCAGCCTGTTCGTCGGTGCCAAGGTTGATGAAACACTGTTC
GAGGAACTGGAAGACGCCTTGCTGATGGCAGATGCGGGCGTTGAGGCTACCGAGAAACTGATTACCGCCTTGCGTGCCCG
TGTTCGCAAGGAAAAAGTCAGTGATGCGGCTCAGGTCAAACAAATCTTGTGCGACATCCTGACTGACCACTTGAAGCCCT
TGGAGAAATCGTTCCCTCTGGAGTCGAGCAAGCCGCTGGTTGTCATGATTGCCGGGGTGAATGGTGCAGGTAAAACCACG
TCTATCGGTAAATTGGCCCACACCTTCCAGGAGCAGGGCGCAAAAGTCTTGCTGGCCGCCGGCGATACCTTCCGTGCTGC
TGCTCGTGAACAGCTGATTGAGTGGGGCACCCGCAATAACGTCAGCGTTATTGCTCAGGATGGTGGCGACCCCGCCGCCG
TGGCTTTTGATGCGGTACATGCAGGCCGTGCCCGTGATATGGGCGTGGTCATGGTGGACACTGCCGGTCGCTTGCCGACT
CAGCTGCACCTGATGGAAGAGCTCAAGAAGATCAAGCGTGTGATTGGCAAGGCCGATGGCCAGGCTCCCCATGAAATTCT
CTTGGTTGTAGACGGCAACACTGGCCAGAACGCCATTTCCCAGATCCGTGCGTTTGATGCGGCCTTGGGGCTGACTGGTC
TGGTTGTCACCAAGCTGGACGGTACCGCCAAAGGCGGTACGCTGGCTGCCGTTGCAGCCTGTGCGCAAGGCGTACGTCCT
ATCCCGGTTTACTGGATTGGCGTGGGCGAGGGTATGCAGGATCTGCAGGCTTTTGTGGCACGAGAGTTCGCGTCGGCCTT
GTTGGGCATGAACGCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (146-349)

• SRP54-type protein, helical bundle domain (SRP54_N) (63-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.824	86.932	0.511