Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   STA7437_RS16195 Genome accession   NC_019748
Coordinates   3729313..3730620 (+) Length   435 a.a.
NCBI ID   WP_245562041.1    Uniprot ID   -
Organism   Stanieria cyanosphaera PCC 7437     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3724313..3735620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STA7437_RS16170 (Sta7437_3293) dnaN 3725726..3727009 (-) 1284 WP_015194462.1 DNA polymerase III subunit beta -
  STA7437_RS16175 (Sta7437_3294) - 3727344..3727592 (+) 249 WP_041620090.1 DUF6761 family protein -
  STA7437_RS16180 (Sta7437_3295) grxD 3727709..3728032 (-) 324 WP_015194464.1 Grx4 family monothiol glutaredoxin -
  STA7437_RS16185 (Sta7437_3296) - 3728112..3728372 (-) 261 WP_015194465.1 BolA family protein -
  STA7437_RS16190 (Sta7437_3297) - 3728447..3729034 (-) 588 WP_015194466.1 hypothetical protein -
  STA7437_RS16195 (Sta7437_3298) comA 3729313..3730620 (+) 1308 WP_245562041.1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein Machinery gene
  STA7437_RS16200 (Sta7437_3299) - 3730744..3731613 (-) 870 WP_015194468.1 fructosamine kinase family protein -
  STA7437_RS16205 (Sta7437_3300) - 3731864..3732616 (+) 753 WP_015194469.1 calcium-binding protein -
  STA7437_RS16210 (Sta7437_3301) hemJ 3732677..3733270 (-) 594 WP_015194470.1 protoporphyrinogen oxidase HemJ -
  STA7437_RS16215 (Sta7437_3302) - 3733374..3733694 (+) 321 WP_015194471.1 cupin domain-containing protein -
  STA7437_RS16220 (Sta7437_3303) - 3733698..3735137 (+) 1440 WP_015194472.1 bifunctional orotidine-5'-phosphate decarboxylase/orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 435 a.a.        Molecular weight: 49216.65 Da        Isoelectric Point: 6.4001

>NTDB_id=54932 STA7437_RS16195 WP_245562041.1 3729313..3730620(+) (comA) [Stanieria cyanosphaera PCC 7437]
MKQDQFIQVYFNYQADLGNSYTDPYRKITRPGDDLEAVILKEINAAQSSIDLAVQEFKLPKIAKALVQKYRSGVKVRVIL
ENNYSLPLSQLSLTEVNRLASRDRSKYQDFLALIDSNQDGRLSNSEIAQGDALIIFKNAGIPLIDDTADGSKGSGLMHHK
FMIIDRKIVLTGSVNYTLSDIHGDFTNLETRGNANNLLVINNQQLARLFTEEFNYMWGDGVGGNFDSLFGLAKPYRSPQQ
LVWNDTTVEIQFSPTSPSKDWELSSNGLIGKTISNADNSIDLALFVFSEQKLVDLLAQAQQKQVKIQGIFEPEFALRSYS
EVLDMWGVALRDRCKYEANNNPWKKSINTVGIAQLVKGDKLHHKFAVIDRNTVITGSHNWSEAANYNNDENLLIIKNATV
AQHFQQQFNLLYEQTKLEIPPYFQTKLAKQQQQCF

Nucleotide


Download         Length: 1308 bp        

>NTDB_id=54932 STA7437_RS16195 WP_245562041.1 3729313..3730620(+) (comA) [Stanieria cyanosphaera PCC 7437]
TTGAAACAAGATCAATTTATTCAAGTTTATTTTAATTATCAAGCGGATTTAGGCAATAGTTATACTGATCCTTATCGTAA
GATTACTCGACCAGGAGATGATTTAGAAGCTGTTATTTTGAAAGAAATTAATGCTGCCCAATCTAGTATAGATTTAGCTG
TACAAGAATTTAAACTACCTAAAATAGCTAAAGCTTTAGTTCAAAAATATCGCTCAGGAGTTAAAGTCAGAGTTATTTTG
GAAAATAACTATAGTCTTCCTCTTAGTCAATTAAGTTTAACAGAAGTAAATCGACTAGCAAGTCGCGATCGCTCTAAATA
TCAAGATTTTTTAGCTTTAATAGATAGTAATCAAGATGGAAGACTTAGTAATTCTGAAATTGCTCAAGGCGATGCTTTAA
TAATTTTTAAAAATGCTGGTATTCCATTAATTGATGATACTGCTGATGGTTCAAAGGGCAGTGGTTTGATGCATCATAAG
TTTATGATTATTGACCGCAAAATTGTTTTAACTGGCTCGGTTAACTATACTTTAAGTGATATCCATGGAGATTTTACTAA
TCTTGAAACTAGAGGTAACGCTAATAATTTATTAGTAATTAATAATCAACAATTAGCTCGATTATTTACAGAAGAATTTA
ATTATATGTGGGGTGATGGAGTTGGCGGAAATTTTGATAGTTTGTTTGGTTTAGCAAAACCTTATCGTTCTCCGCAGCAA
CTTGTTTGGAATGATACTACTGTAGAAATACAATTTTCTCCTACTTCTCCTAGTAAAGATTGGGAACTGAGTAGCAATGG
TTTAATTGGTAAAACTATTAGCAATGCGGACAATTCTATTGATTTAGCTTTATTTGTTTTTAGTGAACAAAAATTAGTCG
ATTTACTTGCACAAGCGCAACAAAAACAAGTTAAAATTCAAGGCATATTTGAACCAGAATTTGCTTTACGTTCTTACAGT
GAAGTATTAGATATGTGGGGAGTTGCTTTACGCGACCGCTGTAAATATGAAGCCAATAATAATCCTTGGAAAAAATCAAT
TAATACAGTAGGAATAGCTCAATTAGTTAAAGGAGATAAACTGCATCACAAATTTGCTGTCATTGATCGCAATACAGTAA
TTACTGGCTCACACAATTGGTCAGAGGCTGCCAATTATAATAATGATGAAAATCTTTTAATTATTAAAAATGCTACCGTT
GCCCAACATTTCCAACAGCAATTTAATCTACTTTACGAACAAACTAAATTAGAAATACCTCCTTATTTTCAAACCAAATT
GGCAAAACAACAGCAACAATGTTTTTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(39-217)

PLD-like domain (PLDc_2)

(271-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.618

99.77

0.485

Multiple sequence alignment