Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   J5F39_RS07485 Genome accession   NZ_CP071936
Coordinates   1549192..1550391 (-) Length   399 a.a.
NCBI ID   WP_283491881.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544192..1555391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS07460 - 1544227..1544745 (-) 519 WP_000760568.1 hypothetical protein -
  J5F39_RS07465 - 1544742..1545686 (-) 945 WP_097718054.1 CpaF/VirB11 family protein -
  J5F39_RS07470 - 1545691..1545966 (-) 276 WP_198931034.1 hypothetical protein -
  J5F39_RS07475 - 1545984..1546955 (-) 972 WP_283491879.1 hypothetical protein -
  J5F39_RS07480 - 1546968..1549208 (-) 2241 WP_283491880.1 collagen-like protein -
  J5F39_RS07485 comB10 1549192..1550391 (-) 1200 WP_283491881.1 DNA type IV secretion system protein ComB10 Machinery gene
  J5F39_RS07490 - 1550388..1552028 (-) 1641 WP_283491882.1 TrbG/VirB9 family P-type conjugative transfer protein -
  J5F39_RS07495 - 1552025..1553191 (-) 1167 WP_283491883.1 VirB8/TrbF family protein -
  J5F39_RS07500 - 1553184..1553318 (-) 135 WP_000723782.1 hypothetical protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 44708.42 Da        Isoelectric Point: 10.1066

>NTDB_id=549292 J5F39_RS07485 WP_283491881.1 1549192..1550391(-) (comB10) [Helicobacter pylori strain MTT03]
MNKSLLKKIGLVIGGFGVLMALGLLANKDSNNNNKEEILQISESKFPLSDYFFEEVKEEPKKEESPKTTTTPQPTASTTA
NVSTNPIITDYSHLNNNLNKQHNTLTHLQQVLQSPPKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFANMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLIGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKTKEEINNEEEI

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=549292 J5F39_RS07485 WP_283491881.1 1549192..1550391(-) (comB10) [Helicobacter pylori strain MTT03]
ATGAATAAATCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGCGTTTTAATGGCATTAGGACTGCTTGCTAA
TAAAGACTCAAACAATAACAATAAAGAAGAAATCCTTCAAATAAGCGAGAGTAAATTCCCCCTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAACAACCACGCCACAACCTACAGCTTCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTAAACAAGCAACATAACACCCTTACGCA
TTTACAACAAGTTTTACAAAGCCCCCCTAAAATAAAGCCTAAACCAAAACATACTAAGGAACAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGTGTGGATAGTTTTACTAATTTA
AAATATAAAGACATTGGCACTAACGAGCATAAGCTCTTAAGAACCATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCTCAAGTAGAGAGCGATATATTTGCAAATATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGTATCAATATCATGCTCACTAATGCAAGAGGGGCTGATGTGAAAGGCTATAATGG
CTTAATAGGCAAATACATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGTAGAGTGTTTATTAGCCCTAATTTAGACATTTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCCCTAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.904

99.499

0.536