Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LTK15_RS00180 Genome accession   NZ_CP089154
Coordinates   40704..41174 (-) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain UNC_SaCF36     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 35704..46174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTK15_RS00150 (LTK15_00150) - 35739..36152 (+) 414 WP_001123306.1 DUF393 domain-containing protein -
  LTK15_RS00155 (LTK15_00155) - 36352..36795 (+) 444 WP_000070865.1 Dps family protein -
  LTK15_RS00160 (LTK15_00160) deoD 36916..37626 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  LTK15_RS00165 (LTK15_00165) deoC 37941..38603 (+) 663 WP_001083321.1 deoxyribose-phosphate aldolase -
  LTK15_RS00170 (LTK15_00170) - 38887..40188 (+) 1302 WP_001242295.1 pyrimidine-nucleoside phosphorylase -
  LTK15_RS00175 (LTK15_00175) - 40202..40552 (+) 351 WP_001024033.1 membrane protein -
  LTK15_RS00180 (LTK15_00180) luxS 40704..41174 (-) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  LTK15_RS00185 (LTK15_00185) - 41485..42669 (+) 1185 WP_001291503.1 M20 family metallopeptidase -
  LTK15_RS00190 (LTK15_00190) - 42669..43862 (+) 1194 WP_000186239.1 hypothetical protein -
  LTK15_RS00195 (LTK15_00195) - 44260..44931 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  LTK15_RS00200 (LTK15_00200) coaW 45061..45864 (-) 804 WP_000862734.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=549039 LTK15_RS00180 WP_000164421.1 40704..41174(-) (luxS) [Staphylococcus aureus strain UNC_SaCF36]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=549039 LTK15_RS00180 WP_000164421.1 40704..41174(-) (luxS) [Staphylococcus aureus strain UNC_SaCF36]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTACTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404