Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LRO88_RS22610 Genome accession   NZ_CP089148
Coordinates   4181780..4182574 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain NIB353     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4176780..4187574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS22575 - 4176912..4177466 (-) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -
  LRO88_RS22580 - 4177650..4178285 (-) 636 WP_014481470.1 SdpI family protein -
  LRO88_RS22585 - 4178285..4178569 (-) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  LRO88_RS22590 rocR 4178796..4180181 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  LRO88_RS22595 - 4180163..4180315 (-) 153 Protein_4416 ATP-binding protein -
  LRO88_RS22600 - 4180343..4180475 (-) 133 Protein_4417 hypothetical protein -
  LRO88_RS22605 htrA 4180496..4181698 (-) 1203 WP_046161071.1 serine protease HtrC Regulator
  LRO88_RS22610 vicX 4181780..4182574 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  LRO88_RS22615 walI 4182596..4183438 (-) 843 WP_014481473.1 WalRK two-component regulatory system regulator WalI -
  LRO88_RS22620 walH 4183425..4184792 (-) 1368 WP_159377178.1 WalRK two-component regulatory system regulator WalH -
  LRO88_RS22625 walK 4184782..4186617 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  LRO88_RS22630 walR 4186625..4187332 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=549035 LRO88_RS22610 WP_003226939.1 4181780..4182574(-) (vicX) [Bacillus subtilis strain NIB353]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=549035 LRO88_RS22610 WP_003226939.1 4181780..4182574(-) (vicX) [Bacillus subtilis strain NIB353]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTTGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTGGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAAAC
AGTGAAGTCGTTCGGCGGACTTGATGTTGAATCATTTGGCGTTTCCCACGATGCGGCCGAGCCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCATGATGTCGGCATGCTGCAAATGGGAAGATACCCGTGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53