Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LRO88_RS20635 Genome accession   NZ_CP089148
Coordinates   3796016..3797149 (-) Length   377 a.a.
NCBI ID   WP_064671479.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3791016..3802149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS20590 ywnA 3791177..3791578 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  LRO88_RS20595 ureC 3791713..3793422 (-) 1710 WP_003243090.1 urease subunit alpha -
  LRO88_RS20600 ureB 3793419..3793793 (-) 375 WP_003227726.1 urease subunit beta -
  LRO88_RS20605 ureA 3793790..3794107 (-) 318 WP_003227724.1 urease subunit gamma -
  LRO88_RS20610 - 3794303..3794463 (-) 161 Protein_4017 hypothetical protein -
  LRO88_RS20620 - 3794696..3794908 (-) 213 Protein_4018 urea ABC transporter substrate-binding protein -
  LRO88_RS20625 csbD 3795121..3795309 (-) 189 WP_003227718.1 stress response protein CsbD -
  LRO88_RS20630 - 3795382..3795861 (-) 480 WP_003244390.1 hypothetical protein -
  LRO88_RS20635 rapC 3796016..3797149 (-) 1134 WP_064671479.1 response regulator aspartate phosphatase RapB Regulator
  LRO88_RS20640 moaA 3797342..3798367 (-) 1026 WP_064671478.1 GTP 3',8-cyclase MoaA -
  LRO88_RS20645 fdhD 3798383..3799171 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  LRO88_RS20650 - 3799404..3799565 (-) 162 WP_021480806.1 hypothetical protein -
  LRO88_RS20655 ywmD 3799660..3800334 (-) 675 WP_003243553.1 vWA domain-containing protein -
  LRO88_RS20660 - 3800387..3800527 (-) 141 WP_014478246.1 hypothetical protein -
  LRO88_RS20665 ywmC 3800657..3801340 (-) 684 WP_003227700.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45083.22 Da        Isoelectric Point: 4.7975

>NTDB_id=549026 LRO88_RS20635 WP_064671479.1 3796016..3797149(-) (rapC) [Bacillus subtilis strain NIB353]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYREAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=549026 LRO88_RS20635 WP_064671479.1 3796016..3797149(-) (rapC) [Bacillus subtilis strain NIB353]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAGAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424