Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   LRO88_RS17965 Genome accession   NZ_CP089148
Coordinates   3261141..3262004 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain NIB353     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3256141..3267004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS17930 mrpE 3256307..3256783 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  LRO88_RS17935 mrpF 3256783..3257067 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  LRO88_RS17940 mnhG 3257051..3257425 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  LRO88_RS17945 yuxO 3257466..3257846 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  LRO88_RS17950 comA 3257865..3258509 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  LRO88_RS17955 comP 3258590..3260902 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  LRO88_RS17960 comX 3260918..3261139 (-) 222 WP_014480704.1 competence pheromone ComX -
  LRO88_RS17965 comQ 3261141..3262004 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  LRO88_RS17970 degQ 3262189..3262329 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  LRO88_RS17975 - 3262551..3262676 (+) 126 WP_003228793.1 hypothetical protein -
  LRO88_RS17980 - 3262791..3263159 (+) 369 WP_046381300.1 hypothetical protein -
  LRO88_RS17985 pdeH 3263135..3264364 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  LRO88_RS17990 pncB 3264501..3265973 (-) 1473 WP_159377062.1 nicotinate phosphoribosyltransferase -
  LRO88_RS17995 pncA 3265989..3266540 (-) 552 WP_038828671.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=549010 LRO88_RS17965 WP_014480705.1 3261141..3262004(-) (comQ) [Bacillus subtilis strain NIB353]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=549010 LRO88_RS17965 WP_014480705.1 3261141..3262004(-) (comQ) [Bacillus subtilis strain NIB353]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439