Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   LRO88_RS10090 Genome accession   NZ_CP089148
Coordinates   1906946..1907563 (-) Length   205 a.a.
NCBI ID   WP_003238209.1    Uniprot ID   G4NVV3
Organism   Bacillus subtilis strain NIB353     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1901946..1912563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS10060 yndJ 1902259..1903899 (+) 1641 WP_159376817.1 YndJ family protein -
  LRO88_RS10065 - 1903989..1904303 (+) 315 WP_172861842.1 hypothetical protein -
  LRO88_RS10070 pghL 1904528..1905286 (+) 759 WP_021479204.1 gamma-polyglutamate hydrolase PghL -
  LRO88_RS10075 - 1905313..1905762 (-) 450 WP_003245454.1 YndM family protein -
  LRO88_RS10080 fosM 1905973..1906407 (+) 435 WP_070549066.1 FosM family fosfomycin resistance protein -
  LRO88_RS10085 - 1906316..1906574 (+) 259 Protein_1939 hypothetical protein -
  LRO88_RS10090 dinR/lexA 1906946..1907563 (-) 618 WP_003238209.1 transcriptional repressor LexA Regulator
  LRO88_RS10095 yneA 1907713..1908030 (+) 318 WP_003231598.1 cell division suppressor protein YneA -
  LRO88_RS10100 dinL 1908049..1908702 (+) 654 WP_003231596.1 YneB family resolvase-like protein -
  LRO88_RS10105 ynzC 1908766..1908999 (+) 234 WP_003231595.1 DUF896 domain-containing protein -
  LRO88_RS10110 recP/tkt 1909168..1911171 (+) 2004 WP_231834282.1 transketolase Machinery gene
  LRO88_RS10115 sirA 1911324..1911770 (+) 447 WP_231834283.1 sporulation inhibitor of replication protein SirA -
  LRO88_RS10120 yneF 1911856..1912074 (+) 219 WP_003221221.1 YneF family protein -
  LRO88_RS10125 ynzD 1912148..1912321 (-) 174 WP_010886518.1 aspartyl-phosphate phosphatase YnzD -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22849.36 Da        Isoelectric Point: 5.1450

>NTDB_id=548965 LRO88_RS10090 WP_003238209.1 1906946..1907563(-) (dinR/lexA) [Bacillus subtilis strain NIB353]
MTKLSKRQLDILRFIKAEVKSKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEILDEEVDIPQSQV
VNVPVIGKVTAGSPITAVENIEEYFPLPDRMVPPDEHVFMLEIMGDSMIDAGILDKDYVIVKQQNTANNGEIVVAMTEDD
EATVKRFYKEDTHIRLQPENPTMEPIILQNVSILGKVIGVFRTVH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=548965 LRO88_RS10090 WP_003238209.1 1906946..1907563(-) (dinR/lexA) [Bacillus subtilis strain NIB353]
ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGCAGAGGTTAAATCAAAAGGATATCCGCCTTC
CGTGAGAGAGATCGGAGAGGCTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTGGAAACAAAAG
GGCTGATCAGACGGGATCCGACAAAACCAAGAGCAATAGAAATTCTTGATGAAGAAGTAGACATTCCGCAAAGCCAGGTC
GTTAATGTACCAGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACTGCAGTAGAAAATATTGAAGAATATTTTCCGCT
CCCTGACCGCATGGTTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATGATAGATGCTGGTATTC
TCGATAAGGACTATGTCATCGTTAAACAGCAAAACACAGCGAACAATGGGGAAATTGTAGTTGCGATGACAGAAGATGAT
GAAGCAACTGTAAAACGATTCTATAAAGAGGATACACACATTCGCTTGCAGCCTGAGAACCCAACGATGGAACCTATCAT
TTTGCAGAATGTCAGCATTCTAGGGAAAGTGATTGGCGTGTTCAGAACAGTCCATTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(84-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

100

100

1