Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LRO88_RS09635 Genome accession   NZ_CP089148
Coordinates   1829471..1829902 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain NIB353     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824471..1834902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS09615 spoVS 1825032..1825292 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LRO88_RS09620 tdh 1825558..1826601 (+) 1044 WP_122894523.1 L-threonine 3-dehydrogenase -
  LRO88_RS09625 kbl 1826614..1827792 (+) 1179 WP_122894522.1 glycine C-acetyltransferase -
  LRO88_RS09630 miaB 1827940..1829469 (+) 1530 WP_231834275.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LRO88_RS09635 ymcA 1829471..1829902 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  LRO88_RS09640 cotE 1830163..1830708 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  LRO88_RS09645 hexA 1830841..1833417 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=548962 LRO88_RS09635 WP_003231834.1 1829471..1829902(+) (ymcA) [Bacillus subtilis strain NIB353]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=548962 LRO88_RS09635 WP_003231834.1 1829471..1829902(+) (ymcA) [Bacillus subtilis strain NIB353]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGATGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1