Detailed information NTG0548941

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LRO88_RS07230
• Genome accession: NZ_CP089148
• Coordinates: 1362538..1363674 (+)
• Length: 378 a.a.
• NCBI ID: WP_231834238.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain NIB353
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1357538..1368674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO88_RS07210	uxaA	1357995..1359488 (+)	1494	WP_159376775.1	UxaA family hydrolase	-
LRO88_RS07215	yjnA	1359527..1360291 (-)	765	WP_014476525.1	sulfite exporter TauE/SafE family protein	-
LRO88_RS07220	bstD	1360510..1360974 (-)	465	WP_014479541.1	DinB family protein	-
LRO88_RS07225	yjoB	1361123..1362394 (+)	1272	WP_003232739.1	ATPase YjoB	-
LRO88_RS07230	rapC	1362538..1363674 (+)	1137	WP_231834238.1	response regulator aspartate phosphatase RapA	Regulator
LRO88_RS07235	phrA	1363664..1363798 (+)	135	WP_003245487.1	phosphatase RapA inhibitor PhrA	-
LRO88_RS07240	yjpA	1363828..1364085 (-)	258	WP_003232731.1	YciI family protein	-
LRO88_RS07245	xlyB	1364206..1365159 (+)	954	WP_159376776.1	N-acetylmuramoyl-L-alanine amidase	-
LRO88_RS07250	yjqA	1365199..1365576 (-)	378	WP_014479546.1	PH domain-containing protein	-
LRO88_RS07255	pghB	1365681..1366283 (+)	603	WP_038828723.1	poly-gamma-glutamate hydrolase family protein	-
LRO88_RS07260	xpdC	1366360..1367196 (+)	837	WP_003245071.1	manganese catalase family protein	-
LRO88_RS07265	xkdA	1367253..1367849 (-)	597	WP_003232721.1	ImmA/IrrE family metallo-endopeptidase	-
LRO88_RS07270	xre	1368012..1368353 (-)	342	WP_003232719.1	HTH-type transcriptional regulator Xre	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 45118.29 Da
• Isoelectric Point: 4.6857

>NTDB_id=548941 LRO88_RS07230 WP_231834238.1 1362538..1363674(+) (rapC) [Bacillus subtilis strain NIB353]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEENQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=548941 LRO88_RS07230 WP_231834238.1 1362538..1363674(+) (rapC) [Bacillus subtilis strain NIB353]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGAGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-67)

• Tetratricopeptide repeat (TPR_12) (221-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.947	99.471	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	41.689	100	0.418