Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LRO88_RS04265 Genome accession   NZ_CP089148
Coordinates   803248..804378 (+) Length   376 a.a.
NCBI ID   WP_159376690.1    Uniprot ID   -
Organism   Bacillus subtilis strain NIB353     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 798248..809378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO88_RS04245 - 798424..798897 (-) 474 WP_014479086.1 immunity protein YezG family protein -
  LRO88_RS04250 yeeF 798902..800911 (-) 2010 WP_141949849.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  LRO88_RS04255 - 801091..802098 (+) 1008 WP_159376689.1 hypothetical protein -
  LRO88_RS04260 - 802241..803083 (+) 843 WP_231834192.1 hypothetical protein -
  LRO88_RS04265 rapC 803248..804378 (+) 1131 WP_159376690.1 response regulator aspartate phosphatase RapH Regulator
  LRO88_RS04270 phrH 804368..804541 (+) 174 WP_032726704.1 phosphatase RapH inhibitor PhrH -
  LRO88_RS04275 yeeI 804701..805420 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LRO88_RS04280 yeeK 805554..805985 (+) 432 WP_038828347.1 spore coat protein YeeK -
  LRO88_RS04285 yezE 806099..806683 (+) 585 WP_038828345.1 TetR/AcrR family transcriptional regulator -
  LRO88_RS04290 yesE 806763..807206 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  LRO88_RS04295 yesF 807203..808071 (+) 869 Protein_796 NmrA family NAD(P)-binding protein -
  LRO88_RS04300 cotJA 808198..808446 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  LRO88_RS04305 cotJB 808430..808693 (+) 264 WP_003219491.1 spore coat protein CotJB -
  LRO88_RS04310 cotJC 808708..809277 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43999.23 Da        Isoelectric Point: 5.8846

>NTDB_id=548915 LRO88_RS04265 WP_159376690.1 803248..804378(+) (rapC) [Bacillus subtilis strain NIB353]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACSRSAATVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=548915 LRO88_RS04265 WP_159376690.1 803248..804378(+) (rapC) [Bacillus subtilis strain NIB353]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATATTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTTGAAGCCATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAATTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTTCCCGGAGTGCTGCCACTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396